Miyakogusa Predicted Gene

Lj4g3v2628750.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7L667_SOYBN 1101 76.0 81.5 (tr|K7L667) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G29630.2 629 58.5 72.9 | Symbols: | 5'-3' exonuclease family protein | chr1:10349587-10353538 FORWARD LENGTH=735
Medicago Medtr8g087940.2 1031 71.7 80.3 | 5'-3' exonuclease family protein | HC | chr8:36390120-36384591 | 20130731
Soybean Glyma08g12770.1 914 68.0 74.0  
LJGI gnl|LJGI|TC60224 1403 100.0 100.0 similar to UniRef100_A5Y728 Cluster: Exonuclease; n=1; Cucumis melo|Rep: Exonuclease - Cucumis melo (Muskmelon), partial (70%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2628750.1 length: 696 aa.
IPR006084 XPG/Rad2 endonuclease
method AccNumber shortName E-value location
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
FPrintScan PR00853 XPGRADSUPER 3.4e-29 24-38
73-92
137-154
158-178
216-231
HMMPanther PTHR11081 XP-G/RAD2 1.3e-169 1-483
IPR006085 XPG N-terminal
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
HMMPfam PF00752 XPG_N 3.7e-23 1-98
HMMSmart SM00485 Xeroderma 1.1e-30 1-99
IPR006086 XPG-I domain
Molecular Function GO:0004518 nuclease activity    
HMMPfam PF00867 XPG_I 7.7e-25 139-226
HMMSmart SM00484 Xeroderma 9.7e-18 138-208
IPR008918 Helix-hairpin-helix motif, class 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003824 catalytic activity    
HMMSmart SM00279 Helix-hairpin-helix 1.3e-05 213-246
IPR019974 XPG conserved site
Molecular Function GO:0016788 hydrolase activity, acting on ester bonds    
PatternScan PS00841 XPG_1 NA 71-85
IPR020045 5'-3' exonuclease, C-terminal domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003824 catalytic activity    
superfamily SSF47807 5' 3.3e-24 211-333
no_ID  
Gene3D G3DSA:1.10.150.20 no description 2.1e-07 212-256
Gene3D G3DSA:3.40.50.1010 no description 1.3e-53 1-195
HMMPanther PTHR11081:SF8 EXONUCLEASE 1.3e-169 1-483
Seg seg seg NA 392-417
641-656
superfamily SSF88723 PIN 3.9e-65 2-226
Wolf-PSORT
Lj4g3v2628750.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2628750.1