Miyakogusa Predicted Gene

Lj4g3v2605950.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LJG4_MEDTR 479 71.9 80.2 (tr|G7LJG4) Cellulose synthase OS=Medicago truncatula GN=MTR_8g086600 PE=4 SV=1
TAIR_pep AT5G45760.1 351 54.6 72.5 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:18561121-18563005 FORWARD LENGTH=360
Medicago Medtr8g086605.1 508 76.8 85.4 | transducin/WD-like repeat-protein | HC | chr8:35940332-35933082 | 20130731
Soybean Glyma05g29250.1 429 72.6 81.2  
LJGI gnl|LJGI|TC58758 1098 100.0 100.0 weakly similar to UniRef100_UPI0000162829 Cluster: transducin family protein / WD-40 repeat family protein; n=1; Arabidopsis thaliana|Rep: transducin family protein / WD-40 repeat family protein - Arabidopsis thaliana, partial (49%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2605950.1 length: 321 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 8.2e-08 229-266
HMMSmart SM00320 WD40 14 40-79
82-123
224-266
279-319
ProfileScan PS50082 WD_REPEATS_2 11.945 231-266
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 9.7e-27 232-320
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.023 47-132
231-275
superfamily SSF50978 WD40 2.9e-26 5-320
no_ID  
HMMPanther PTHR22847 WD40 1.1e-74 1-266
HMMPanther PTHR22847:SF206HYPOTHETICAL PROTEIN 1.1e-74 1-266
Seg seg seg NA 171-183
Wolf-PSORT
Lj4g3v2605950.1	E.R. 5, chlo 3, E.R._plas 3, cyto_E.R. 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2605950.1