Miyakogusa Predicted Gene

Lj4g3v2604650.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL C6SXW0_SOYBN 243 91.1 95.1 (tr|C6SXW0) Uncharacterized protein OS=Glycine max PE=2 SV=1

TAIR_pep AT2G42610.2 226 83.7 91.9 | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177

Medicago Medtr2g016110.2 240 87.8 94.3 | DUF640 family protein | HC | chr2:4862736-4867366 | 20130731

Soybean Glyma15g08880.2 243 91.1 95.1

LJGI gnl|LJGI|TC61313 73.8 83.2 83.2

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2604650.1 length: 175 aa.

IPR006936 Domain of unknown function DUF640

method AccNumber shortName E-value location

HMMPfam PF04852 DUF640 2e-62 28-156

no_ID

HMMPanther PTHR31165 FAMILY 1.5e-103 15-174

Seg seg seg NA 5-43
167-173

Wolf-PSORT

Lj4g3v2604650.1 chlo 8, nucl 6

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2604650.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	C6SXW0_SOYBN	243	91.1	95.1	(tr\|C6SXW0) Uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep	AT2G42610.2	226	83.7	91.9	\| Symbols: LSH10 \| Protein of unknown function (DUF640) \| chr2:17748005-17748538 FORWARD LENGTH=177
Medicago	Medtr2g016110.2	240	87.8	94.3	\| DUF640 family protein \| HC \| chr2:4862736-4867366 \| 20130731
Soybean	Glyma15g08880.2	243	91.1	95.1
LJGI	gnl\|LJGI\|TC61313	73.8	83.2	83.2

IPR006936	Domain of unknown function DUF640
Lj4g3v2604650.1				length: 175 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF04852	DUF640	2e-62	28-156
no_ID
HMMPanther	PTHR31165	FAMILY	1.5e-103	15-174
Seg	seg	seg	NA	5-43 167-173