Miyakogusa Predicted Gene

Lj4g3v2604490.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7L636_SOYBN 439 62.3 67.3 (tr|K7L636) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G28590.1 296 81.0 90.8 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125367-14126828 REVERSE LENGTH=331

Medicago Medtr8g086060.1 426 63.1 68.7 | thioredoxin family protein, putative | HC | chr8:35719691-35722568 | 20130731

Soybean Glyma05g29040.1 423 71.2 76.8

LJGI gnl|LJGI|FS348812 1072 99.8 99.8 similar to UniRef100_A7Q1P7 Cluster: Chromosome chr7 scaffold_44, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_44, whole genome shotgun sequence - Vitis vinifera (Grape), partial (60%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2604490.1 length: 367 aa.

IPR012336 Thioredoxin-like fold

method AccNumber shortName E-value location

Gene3D G3DSA:3.40.30.10 no description 0.00013 296-345

superfamily SSF52833 Thioredoxin-like 9e-06 298-345

no_ID

Seg seg seg NA 31-43
148-196

Wolf-PSORT

Lj4g3v2604490.1 cyto 6, chlo 5, nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2604490.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7L636_SOYBN	439	62.3	67.3	(tr\|K7L636) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G28590.1	296	81.0	90.8	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). \| chr4:14125367-14126828 REVERSE LENGTH=331
Medicago	Medtr8g086060.1	426	63.1	68.7	\| thioredoxin family protein, putative \| HC \| chr8:35719691-35722568 \| 20130731
Soybean	Glyma05g29040.1	423	71.2	76.8
LJGI	gnl\|LJGI\|FS348812	1072	99.8	99.8	similar to UniRef100_A7Q1P7 Cluster: Chromosome chr7 scaffold_44, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr7 scaffold_44, whole genome shotgun sequence - Vitis vinifera (Grape), partial (60%)

IPR012336	Thioredoxin-like fold
Lj4g3v2604490.1				length: 367 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:3.40.30.10	no description	0.00013	296-345
superfamily	SSF52833	Thioredoxin-like	9e-06	298-345
no_ID
Seg	seg	seg	NA	31-43 148-196