Miyakogusa Predicted Gene

Lj4g3v2604450.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LIP3_MEDTR 1000 76.3 86.7 (tr|G7LIP3) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_8g086040 PE=4 SV=1
TAIR_pep AT5G44230.1 738 57.3 73.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17814336-17816309 FORWARD LENGTH=657
Medicago Medtr8g086040.1 1000 76.3 86.7 | pentatricopeptide (PPR) repeat protein | HC | chr8:35708903-35705786 | 20130731
Soybean Glyma05g29020.1 976 76.0 86.9  
LJGI gnl|LJGI|TC57792 1021 99.8 99.8 weakly similar to UniRef100_Q9FFG8 Cluster: Selenium-binding protein-like; n=1; Arabidopsis thaliana|Rep: Selenium-binding protein-like - Arabidopsis thaliana (Mouse-ear cress), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2604450.1 length: 615 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00014 147-173
175-200
206-235
281-307
HMMPfam PF13041 PPR_2 4.3e-08 307-350
HMMPfam PF13812 PPR_3 0.043 77-109
380-405
HMMTigr TIGR00756 PPR: 3.6e-06 78-109
147-175
175-200
282-307
309-342
ProfileScan PS51375 PPR 7.925 75-109
142-176
204-238
177-203
307-341
276-306
239-273
342-372
378-408
444-478
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2e-10 437-463
no_ID  
HMMPanther PTHR24015 FAMILY 0 12-615
HMMPanther PTHR24015:SF150SUBFAMILY NOT 0 12-615
HMMPfam PF14432 DYW_deaminase 8.7e-16 487-604
superfamily SSF48452 TPR-like 0.00078 283-460
142-233
Wolf-PSORT
Lj4g3v2604450.1	chlo 7, extr 5, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2604450.1