Miyakogusa Predicted Gene

Lj4g3v2604270.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KSC8_SOYBN 1978 90.4 92.9 (tr|I1KSC8) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G19820.1 1787 78.8 87.8 | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116

Medicago Medtr8g085950.1 1959 87.8 91.5 | importin beta-3, putative | HC | chr8:35654200-35665133 | 20130731

Soybean Glyma08g12120.1 1978 90.4 92.9

LJGI gnl|LJGI|TC71353 1994 99.9 99.9 similar to UniRef100_A7P079 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2604270.1 length: 1117 aa.

IPR000357 HEAT

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF02985 HEAT 3.6e-06 926-953

IPR001494 Importin-beta, N-terminal

Cellular Component GO:0005643 nuclear pore

Biological Process GO:0006886 intracellular protein transport

Molecular Function GO:0008565 protein transporter activity

HMMSmart SM00913 Importin-beta 0.0045 42-114

IPR011989 Armadillo-like helical

Gene3D G3DSA:1.25.10.10 no description 1.8e-33 604-820
821-1115

IPR016024 Armadillo-type fold

Molecular Function GO:0005488 binding

superfamily SSF48371 ARM 7.5e-38 19-822
689-1089

IPR021133 HEAT, type 2

ProfileScan PS50077 HEAT_REPEAT 8.775 420-458
925-957

no_ID

Coil coil coiled-coil NA 836-857

HMMPanther PTHR10527 IMPORTIN 0 12-1117

HMMPanther PTHR10527:SF5 IMPORTIN-5 0 12-1117

HMMPfam PF13646 HEAT_2 1.7e-08 385-485

Seg seg seg NA 7-19
244-263
654-670
842-856
1101-1117

Wolf-PSORT

Lj4g3v2604270.1 nucl 5, cyto 4, chlo 2, cyto_pero 2, cyto_E.R. 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2604270.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KSC8_SOYBN	1978	90.4	92.9	(tr\|I1KSC8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G19820.1	1787	78.8	87.8	\| Symbols: emb2734 \| ARM repeat superfamily protein \| chr5:6695731-6701247 REVERSE LENGTH=1116
Medicago	Medtr8g085950.1	1959	87.8	91.5	\| importin beta-3, putative \| HC \| chr8:35654200-35665133 \| 20130731
Soybean	Glyma08g12120.1	1978	90.4	92.9
LJGI	gnl\|LJGI\|TC71353	1994	99.9	99.9	similar to UniRef100_A7P079 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%)

IPR000357	HEAT
Lj4g3v2604270.1				length: 1117 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF02985	HEAT	3.6e-06	926-953
IPR001494	Importin-beta, N-terminal
Cellular Component	GO:0005643	nuclear pore
Biological Process	GO:0006886	intracellular protein transport
Molecular Function	GO:0008565	protein transporter activity
HMMSmart	SM00913	Importin-beta	0.0045	42-114
IPR011989	Armadillo-like helical
Gene3D	G3DSA:1.25.10.10	no description	1.8e-33	604-820 821-1115
IPR016024	Armadillo-type fold
Molecular Function	GO:0005488	binding
superfamily	SSF48371	ARM	7.5e-38	19-822 689-1089
IPR021133	HEAT, type 2
ProfileScan	PS50077	HEAT_REPEAT	8.775	420-458 925-957
no_ID
Coil	coil	coiled-coil	NA	836-857
HMMPanther	PTHR10527	IMPORTIN	0	12-1117
HMMPanther	PTHR10527:SF5	IMPORTIN-5	0	12-1117
HMMPfam	PF13646	HEAT_2	1.7e-08	385-485
Seg	seg	seg	NA	7-19 244-263 654-670 842-856 1101-1117