Miyakogusa Predicted Gene

Lj4g3v2603640.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KS87_SOYBN 516 68.3 75.7 (tr|I1KS87) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G31740.1 314 45.1 60.0 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:13491053-13495009 REVERSE LENGTH=760

Medicago Medtr8g085220.1 495 67.2 74.3 | S-adenosylmethionine-dependent methyltransferase, putative | HC | chr8:35277098-35269185 | 20130731

Soybean Glyma08g11680.3 516 68.3 75.7

LJGI gnl|LJGI|TC64453 519 100.0 100.0 similar to UniRef100_A7Q701 Cluster: Chromosome chr5 scaffold_58, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_58, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2603640.1 length: 385 aa.

IPR001045 Spermidine/spermine synthases family

method AccNumber shortName E-value location

Molecular Function GO:0003824 catalytic activity

HMMPfam PF01564 Spermine_synth 7.8e-05 195-242

no_ID

Gene3D G3DSA:3.40.50.150 no description 2e-45 267-361

HMMPanther PTHR12176 UNCHARACTERIZED 4.7e-96 7-366

HMMPanther PTHR12176:SF9 SUBFAMILY 4.7e-96 7-366

Seg seg seg NA 56-68
107-121
249-264
274-288

superfamily SSF53335 S-adenosyl-L-methionine-dependent 1.8e-25 172-361

Wolf-PSORT

Lj4g3v2603640.1 cyto 8, E.R. 3, chlo 1, nucl 1, mito 1, chlo_mito 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2603640.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KS87_SOYBN	516	68.3	75.7	(tr\|I1KS87) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G31740.1	314	45.1	60.0	\| Symbols: \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:13491053-13495009 REVERSE LENGTH=760
Medicago	Medtr8g085220.1	495	67.2	74.3	\| S-adenosylmethionine-dependent methyltransferase, putative \| HC \| chr8:35277098-35269185 \| 20130731
Soybean	Glyma08g11680.3	516	68.3	75.7
LJGI	gnl\|LJGI\|TC64453	519	100.0	100.0	similar to UniRef100_A7Q701 Cluster: Chromosome chr5 scaffold_58, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr5 scaffold_58, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)

IPR001045	Spermidine/spermine synthases family
Lj4g3v2603640.1				length: 385 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
HMMPfam	PF01564	Spermine_synth	7.8e-05	195-242
no_ID
Gene3D	G3DSA:3.40.50.150	no description	2e-45	267-361
HMMPanther	PTHR12176	UNCHARACTERIZED	4.7e-96	7-366
HMMPanther	PTHR12176:SF9	SUBFAMILY	4.7e-96	7-366
Seg	seg	seg	NA	56-68 107-121 249-264 274-288
superfamily	SSF53335	S-adenosyl-L-methionine-dependent	1.8e-25	172-361