Miyakogusa Predicted Gene

Lj4g3v2578190.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7L5Z5_SOYBN 822 45.7 54.6 (tr|K7L5Z5) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G23740.1 147 56.7 71.7 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 155 Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr3:8552077-8554730 REVERSE LENGTH=566

Medicago Medtr8g083310.1 804 45.7 57.2 | hypothetical protein | HC | chr8:35046965-35041153 | 20130731

Soybean Glyma05g28320.1 401 55.5 65.8

LJGI gnl|LJGI|DC597852 1108 99.8 99.8 similar to UniRef100_A0YBA4 Cluster: FadD19_2; n=1; marine gamma proteobacterium HTCC2143|Rep: FadD19_2 - marine gamma, partial (2%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2578190.1 length: 1239 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 1146-1167

Seg seg seg NA 13-18
47-58
86-91
350-369
522-539
982-992
1089-1101

Wolf-PSORT

Lj4g3v2578190.1 nucl 11, cyto 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2578190.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7L5Z5_SOYBN	822	45.7	54.6	(tr\|K7L5Z5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G23740.1	147	56.7	71.7	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 155 Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). \| chr3:8552077-8554730 REVERSE LENGTH=566
Medicago	Medtr8g083310.1	804	45.7	57.2	\| hypothetical protein \| HC \| chr8:35046965-35041153 \| 20130731
Soybean	Glyma05g28320.1	401	55.5	65.8
LJGI	gnl\|LJGI\|DC597852	1108	99.8	99.8	similar to UniRef100_A0YBA4 Cluster: FadD19_2; n=1; marine gamma proteobacterium HTCC2143\|Rep: FadD19_2 - marine gamma, partial (2%)

no_ID
Lj4g3v2578190.1				length: 1239 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	1146-1167
Seg	seg	seg	NA	13-18 47-58 86-91 350-369 522-539 982-992 1089-1101