Miyakogusa Predicted Gene
- Lj4g3v2577120.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A5XEM2_MEDTR |
466 |
52.5 |
67.7 |
(tr|A5XEM2) Putative RNA binding protein OS=Medicago truncatula GN=RAN BP PE=4 SV=1 |
| TAIR_pep |
AT5G19820.1 |
411 |
46.3 |
64.0 |
| Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116 |
| Medicago |
Medtr7g085820.1 |
466 |
52.5 |
67.7 |
| importin beta-3, putative | HC | chr7:33289119-33278903 | 20130731 |
| Soybean |
Glyma16g04400.2 |
447 |
53.3 |
67.1 |
|
| LJGI |
gnl|LJGI|AV410177 |
121 |
82.7 |
82.7 |
homologue to UniRef100_A2Q1G7 Cluster: HEAT; n=2; Medicago truncatula|Rep: HEAT - Medicago truncatula (Barrel medic), partial (15%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2577120.1 |
length: 493 aa. |
| IPR011989 |
Armadillo-like helical |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.25.10.10 |
no description |
4e-61 |
24-486 |
| IPR016024 |
Armadillo-type fold |
| Molecular Function |
GO:0005488 |
binding |
|
|
| superfamily |
SSF48371 |
ARM |
6.7e-53 |
19-486 |
| no_ID |
|
| HMMPanther |
PTHR10527 |
IMPORTIN |
9.4e-103 |
12-486 |
| HMMPanther |
PTHR10527:SF5 |
IMPORTIN-5 |
9.4e-103 |
12-486 |
| HMMPfam |
PF13646 |
HEAT_2 |
1.7e-06 |
379-479 |
- Wolf-PSORT
Lj4g3v2577120.1 nucl 7, E.R. 3, cyto 1, mito 1, plas 1, vacu 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2577120.1 |
|