Miyakogusa Predicted Gene
- Lj4g3v2576090.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JBC0_MEDTR |
330 |
74.3 |
84.6 |
(tr|G7JBC0) Protein transport protein Sec23 OS=Medicago truncatula GN=MTR_3g084740 PE=4 SV=1 |
| TAIR_pep |
AT1G05520.1 |
311 |
64.8 |
75.7 |
| Symbols: | Sec23/Sec24 protein transport family protein | chr1:1631126-1635703 REVERSE LENGTH=783 |
| Medicago |
Medtr3g084740.1 |
330 |
74.3 |
84.6 |
| protein transporter Sec23-like protein | HC | chr3:38270252-38263566 | 20130731 |
| Soybean |
Glyma18g00670.1 |
315 |
71.7 |
83.0 |
|
| LJGI |
gnl|LJGI|TC62100 |
1259 |
99.8 |
99.8 |
similar to UniRef100_A7QQS7 Cluster: Chromosome undetermined scaffold_144, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_144, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2576090.1 |
length: 213 aa. |
| IPR006895 |
Zinc finger, Sec23/Sec24-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006886 |
intracellular protein transport |
|
|
| Biological Process |
GO:0006888 |
ER to Golgi vesicle-mediated transport |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| Cellular Component |
GO:0030127 |
COPII vesicle coat |
|
|
| HMMPfam |
PF04810 |
zf-Sec23_Sec24 |
2.1e-16 |
56-95 |
| superfamily |
SSF82919 |
Zn-finger |
5.1e-21 |
47-121 |
| IPR006896 |
Sec23/Sec24, trunk domain |
| Biological Process |
GO:0006886 |
intracellular protein transport |
|
|
| Biological Process |
GO:0006888 |
ER to Golgi vesicle-mediated transport |
|
|
| Cellular Component |
GO:0030127 |
COPII vesicle coat |
|
|
| HMMPfam |
PF04811 |
Sec23_trunk |
1.4e-15 |
125-203 |
| no_ID |
|
| Gene3D |
G3DSA:2.60.40.1670 |
no description |
2.6e-31 |
6-180 |
| HMMPanther |
PTHR11141 |
PROTEIN |
1.3e-98 |
1-206 |
| superfamily |
SSF53300 |
vWA-like |
2.8e-23 |
127-205 |
| superfamily |
SSF81995 |
beta-sandwich |
7.7e-16 |
3-65 |
- Wolf-PSORT
Lj4g3v2576090.1 cyto 7, chlo 3, nucl 2, extr 1, golg 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2576090.1 |
|