Miyakogusa Predicted Gene
- Lj4g3v2573940.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6SZM9_SOYBN |
169 |
91.5 |
94.7 |
(tr|C6SZM9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G03870.1 |
166 |
90.4 |
92.6 |
| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99 |
| Medicago |
Medtr7g065100.1 |
168 |
91.5 |
93.6 |
| u6 snRNA-associated-like-Smprotein | HC | chr7:23716677-23712044 | 20130731 |
| Soybean |
Glyma05g28190.1 |
169 |
91.5 |
94.7 |
|
| LJGI |
gnl|LJGI|TC70953 |
248 |
87.2 |
87.2 |
homologue to UniRef100_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_210, whole genome shotgun sequence - Vitis vinifera (Grape), partial (87%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2573940.1 |
length: 94 aa. |
| IPR001163 |
Ribonucleoprotein LSM domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01423 |
LSM |
8.8e-19 |
10-82 |
| IPR006649 |
Ribonucleoprotein LSM domain, eukaryotic/archaea-type |
| HMMSmart |
SM00651 |
snRNP |
4.6e-23 |
9-82 |
| IPR010920 |
Like-Sm (LSM) domain |
| superfamily |
SSF50182 |
Sm-like |
9.4e-18 |
11-86 |
| IPR017132 |
U6 snRNA-associated Sm-like protein LSm7 |
| HMMPIR |
PIRSF037188 |
U6 |
1.5e-54 |
1-93 |
| no_ID |
|
| Gene3D |
G3DSA:2.30.30.100 |
no description |
4e-24 |
5-87 |
| HMMPanther |
PTHR10553 |
SMALL |
1.8e-46 |
4-94 |
| HMMPanther |
PTHR10553:SF1 |
U6 |
1.8e-46 |
4-94 |
- Wolf-PSORT
Lj4g3v2573940.1 extr 4, cyto 3.5, cyto_nucl 3.5, nucl 2.5, chlo 2, mito 1, plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2573940.1 |
|