Miyakogusa Predicted Gene

Lj4g3v2538150.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KQA5_SOYBN 1253 86.0 92.6 (tr|K7KQA5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G27900.1 1054 72.9 84.1 | Symbols: | RNA helicase family protein | chr1:9715615-9720346 REVERSE LENGTH=700
Medicago Medtr8g080240.1 1223 84.5 91.7 | pre-mRNA splicing factor ATP-dependent RNA helicase | HC | chr8:34490015-34479594 | 20130731
Soybean Glyma05g27850.1 1031 83.9 90.7  
LJGI gnl|LJGI|TC73788 1556 99.7 99.7 similar to UniRef100_A7QBP6 Cluster: Chromosome chr1 scaffold_75, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_75, whole genome shotgun sequence - Vitis vinifera (Grape), partial (32%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2538150.1 length: 698 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 7.8e-11 247-332
HMMSmart SM00490 helicase 4.3e-15 224-333
ProfileScan PS51194 HELICASE_CTER 15.847 197-374
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 2.9e-21 397-491
HMMSmart SM00847 Helicase 2.3e-21 396-491
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.1e-06 20-164
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 5.1e-19 525-639
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 7.4e-26 2-184
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.255 14-175
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 9.4e-94 3-453
no_ID  
Coil coil coiled-coil NA 220-241
Gene3D G3DSA:3.40.50.300 no description 2.6e-11 4-159
200-343
HMMPanther PTHR18934 ATP-DEPENDENT 0 1-632
Seg seg seg NA 55-67
Wolf-PSORT
Lj4g3v2538150.1	chlo 7, cyto 4, nucl 1, plas 1, cysk 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2538150.1