Miyakogusa Predicted Gene

Lj4g3v2526040.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KRZ4_SOYBN 1216 84.5 91.9 (tr|I1KRZ4) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G27880.1 875 62.5 78.9 | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:9708940-9713901 FORWARD LENGTH=911
Medicago Medtr8g080160.1 1159 81.4 87.9 | RecQ family ATP-dependent DNA helicase | HC | chr8:34428957-34437037 | 20130731
Soybean Glyma08g10780.1 1145 79.5 87.6  
LJGI gnl|LJGI|GO012998 1267 99.5 99.5 similar to UniRef100_A7QBR8 Cluster: Chromosome chr1 scaffold_75, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_75, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2526040.1 length: 760 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.2e-18 357-433
HMMSmart SM00490 helicase 1.8e-25 352-433
ProfileScan PS51194 HELICASE_CTER 18.685 322-472
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00690 DEAH_ATP_HELICASE NA 238-247
IPR004589 DNA helicase, ATP-dependent, RecQ type
Biological Process GO:0006310 DNA recombination    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMTigr TIGR00614 recQ_fam: 2.4e-105 113-460
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 9.5e-18 125-287
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2e-23 119-315
ProfileScan PS51192 HELICASE_ATP_BIND_1 22.348 131-301
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.1e-52 131-450
no_ID  
Gene3D G3DSA:3.40.50.300 no description 2.1e-32 107-302
324-445
HMMPanther PTHR13710 DNA 9.1e-204 106-751
HMMPanther PTHR13710:SF1 ROTHMUND-THOMSON 9.1e-204 106-751
Seg seg seg NA 10-20
29-52
60-69
280-287
Wolf-PSORT
Lj4g3v2526040.1	chlo 5, nucl 5, cyto 1, mito 1, plas 1, vacu 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2526040.1