Miyakogusa Predicted Gene

Lj4g3v2468350.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SEX4_LOTJA 689 86.6 86.6 (tr|I3SEX4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT2G34590.1 595 82.6 87.2 | Symbols: | Transketolase family protein | chr2:14568956-14570844 REVERSE LENGTH=406

Medicago Medtr3g076630.1 611 77.3 80.4 | pyruvate dehydrogenase E1 beta subunit | HC | chr3:34442945-34446106 | 20130731

Soybean Glyma05g27260.1 650 80.5 83.2

LJGI gnl|LJGI|TC59871 1132 100.0 100.0 homologue to UniRef100_O24458 Cluster: Pyruvate dehydrogenase E1 beta subunit; n=1; Arabidopsis thaliana|Rep: Pyruvate dehydrogenase E1 beta subunit - Arabidopsis thaliana (Mouse-ear cress), partial (32%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2468350.2 length: 400 aa.

IPR005475 Transketolase-like, pyrimidine-binding domain

method AccNumber shortName E-value location

HMMPfam PF02779 Transket_pyr 6.8e-49 84-254

HMMSmart SM00861 Transketolase, 2.5e-55 80-255

IPR005476 Transketolase, C-terminal

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0008152 metabolic process

HMMPfam PF02780 Transketolase_C 1.5e-34 270-385

IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0008152 metabolic process

superfamily SSF52922 TK 6.5e-37 263-400

IPR015941 Transketolase-like, C-terminal

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0008152 metabolic process

Gene3D G3DSA:3.40.50.920 no description 9.1e-37 272-396

no_ID

Gene3D G3DSA:3.40.50.970 no description 9.7e-73 80-271

HMMPanther PTHR11624 DEHYDROGENASE 1.5e-264 57-399

HMMPanther PTHR11624:SF34 SUBFAMILY 1.5e-264 57-399

Seg seg seg NA 13-33
79-95
187-199

superfamily SSF52518 Thiamin 2.6e-67 76-279

Wolf-PSORT

Lj4g3v2468350.2 chlo 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2468350.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SEX4_LOTJA	689	86.6	86.6	(tr\|I3SEX4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT2G34590.1	595	82.6	87.2	\| Symbols: \| Transketolase family protein \| chr2:14568956-14570844 REVERSE LENGTH=406
Medicago	Medtr3g076630.1	611	77.3	80.4	\| pyruvate dehydrogenase E1 beta subunit \| HC \| chr3:34442945-34446106 \| 20130731
Soybean	Glyma05g27260.1	650	80.5	83.2
LJGI	gnl\|LJGI\|TC59871	1132	100.0	100.0	homologue to UniRef100_O24458 Cluster: Pyruvate dehydrogenase E1 beta subunit; n=1; Arabidopsis thaliana\|Rep: Pyruvate dehydrogenase E1 beta subunit - Arabidopsis thaliana (Mouse-ear cress), partial (32%)

IPR005475	Transketolase-like, pyrimidine-binding domain
Lj4g3v2468350.2				length: 400 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF02779	Transket_pyr	6.8e-49	84-254
HMMSmart	SM00861	Transketolase,	2.5e-55	80-255
IPR005476	Transketolase, C-terminal
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
HMMPfam	PF02780	Transketolase_C	1.5e-34	270-385
IPR009014	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
superfamily	SSF52922	TK	6.5e-37	263-400
IPR015941	Transketolase-like, C-terminal
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
Gene3D	G3DSA:3.40.50.920	no description	9.1e-37	272-396
no_ID
Gene3D	G3DSA:3.40.50.970	no description	9.7e-73	80-271
HMMPanther	PTHR11624	DEHYDROGENASE	1.5e-264	57-399
HMMPanther	PTHR11624:SF34	SUBFAMILY	1.5e-264	57-399
Seg	seg	seg	NA	13-33 79-95 187-199
superfamily	SSF52518	Thiamin	2.6e-67	76-279