Miyakogusa Predicted Gene
- Lj4g3v2401050.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1K3B5_SOYBN |
567 |
71.0 |
81.8 |
(tr|I1K3B5) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G25240.1 |
332 |
42.0 |
63.0 |
| Symbols: | ENTH/VHS/GAT family protein | chr1:8845231-8846361 FORWARD LENGTH=376 |
| Medicago |
Medtr1g033880.1 |
397 |
55.8 |
69.3 |
| ENTH/ANTH/VHS superfamily protein | LC | chr1:12251038-12249896 | 20130731 |
| Soybean |
Glyma05g26800.1 |
557 |
70.7 |
80.8 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2401050.1 |
length: 392 aa. |
| IPR008942 |
ENTH/VHS |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.25.40.90 |
no description |
1e-15 |
32-148 |
| superfamily |
SSF48464 |
ENTH/VHS |
1.1e-18 |
32-149 |
| IPR011417 |
AP180 N-terminal homology (ANTH) domain |
| Molecular Function |
GO:0005543 |
phospholipid binding |
|
|
| HMMPfam |
PF07651 |
ANTH |
2.6e-61 |
32-291 |
| IPR013809 |
Epsin-like, N-terminal |
| ProfileScan |
PS50942 |
ENTH |
15.343 |
25-156 |
| IPR014712 |
Clathrin adaptor, phosphoinositide-binding, GAT-like |
| Molecular Function |
GO:0005545 |
1-phosphatidylinositol binding |
|
|
| Cellular Component |
GO:0030118 |
clathrin coat |
|
|
| Molecular Function |
GO:0030276 |
clathrin binding |
|
|
| Biological Process |
GO:0048268 |
clathrin coat assembly |
|
|
| Gene3D |
G3DSA:1.20.58.150 |
no description |
2.4e-15 |
171-294 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
167-188 |
| HMMPanther |
PTHR22951 |
CLATHRIN |
9.6e-127 |
1-343 |
| HMMPanther |
PTHR22951:SF7 |
SUBFAMILY |
9.6e-127 |
1-343 |
| Seg |
seg |
seg |
NA |
169-178 |
| superfamily |
SSF89009 |
GAT-like |
1.8e-22 |
155-293 |
- Wolf-PSORT
Lj4g3v2401050.1 chlo 5.5, chlo_mito 4, nucl 3.5, cyto_nucl 2.5, mito 1.5, plas 1, pero 1, golg 1, golg_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2401050.1 |
Not targeted |
-23.187 |
-0.164 |
-5.745 |
17.66% |
-17.278
|