Miyakogusa Predicted Gene
- Lj4g3v2400860.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LI88_SOYBN |
540 |
66.2 |
79.9 |
(tr|K7LI88) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G42170.1 |
187 |
29.8 |
51.7 |
| Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696 |
| Medicago |
--No_Hits--
|
|
|
|
|
| Soybean |
Glyma05g20260.1 |
397 |
67.2 |
80.1 |
|
| LJGI |
gnl|LJGI|TC76484 |
161 |
83.1 |
83.1 |
weakly similar to UniRef100_Q9LS83 Cluster: Similarity to Ac-like transposase; n=1; Arabidopsis thaliana|Rep: Similarity to Ac-like transposase - Arabidopsis thaliana (Mouse-ear cress), partial (6%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2400860.1 |
length: 415 aa. |
| IPR012337 |
Ribonuclease H-like domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| superfamily |
SSF53098 |
Ribonuclease |
2.3e-46 |
2-403 |
| IPR025525 |
Domain of unknown function DUF4413 |
| HMMPfam |
PF14372 |
DUF4413 |
7.3e-26 |
218-320 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
299-320 |
| HMMPanther |
PTHR10775 |
UNCHARACTERIZED |
1.9e-59 |
1-407 |
| HMMPanther |
PTHR10775:SF11 |
SUBFAMILY |
1.9e-59 |
1-407 |
| Seg |
seg |
seg |
NA |
322-335 |
- Wolf-PSORT
Lj4g3v2400860.1 cyto 9, chlo 3, nucl 1, cysk 1, cysk_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2400860.1 |
|