Miyakogusa Predicted Gene
- Lj4g3v2373750.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6T767_SOYBN |
415 |
70.8 |
78.7 |
(tr|C6T767) Uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT1G08820.2 |
155 |
59.7 |
72.3 |
| Symbols: VAP27-2 | vamp/synaptobrevin-associated protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386 |
| Medicago |
Medtr4g118760.1 |
406 |
69.1 |
79.4 |
| VAMP-associated protein | HC | chr4:49201562-49205102 | 20130731 |
| Soybean |
Glyma07g38170.1 |
415 |
70.8 |
78.7 |
|
| LJGI |
gnl|LJGI|DC594808 |
642 |
98.6 |
98.6 |
similar to UniRef100_A7NW93 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (38%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2373750.1 |
length: 291 aa. |
| IPR000535 |
Major sperm protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005198 |
structural molecule activity |
|
|
| HMMPfam |
PF00635 |
Motile_Sperm |
5.6e-30 |
6-109 |
| ProfileScan |
PS50202 |
MSP |
29.291 |
5-125 |
| IPR008962 |
PapD-like |
| Gene3D |
G3DSA:2.60.40.360 |
no description |
1.6e-37 |
3-124 |
| superfamily |
SSF49354 |
PapD-like |
9.4e-44 |
1-126 |
| IPR016763 |
Vesicle-associated membrane protein |
| HMMPIR |
PIRSF019693 |
VAMP-associated |
2.3e-53 |
1-291 |
| no_ID |
|
| HMMPanther |
PTHR10809 |
VESICLE-ASSOCIATED |
4.3e-72 |
1-285 |
| HMMPanther |
PTHR10809:SF6 |
VESICLE-ASSOCIATED |
4.3e-72 |
1-285 |
| Seg |
seg |
seg |
NA |
120-136 |
- Wolf-PSORT
Lj4g3v2373750.1 cyto 7, nucl 2, golg 2, chlo 1, mito 1, E.R. 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1, golg_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2373750.1 |
|