Miyakogusa Predicted Gene

Lj4g3v2373740.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7ZZ81_MEDTR 1504 74.4 86.1 (tr|G7ZZ81) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_084s0003 PE=4 SV=1
TAIR_pep AT5G14770.1 785 43.6 60.9 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4772881-4775697 REVERSE LENGTH=938
Medicago Medtr4g089005.1 1504 74.4 86.1 | pentatricopeptide (PPR) repeat protein | HC | chr4:35612850-35609750 | 20130731
Soybean Glyma07g31440.1 1540 74.3 84.0  
LJGI gnl|LJGI|AV779633 835 99.5 99.5 weakly similar to UniRef100_A7PBM0 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2373740.1 length: 1032 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00012 136-157
327-356
431-459
641-657
781-810
886-915
HMMPfam PF12854 PPR_1 2.9e-06 599-631
HMMPfam PF13041 PPR_2 8.3e-14 163-211
233-281
358-406
463-512
533-580
672-717
813-860
918-966
HMMTigr TIGR00756 PPR: 4.5e-06 165-198
238-269
270-295
327-360
361-394
396-429
431-465
466-500
501-534
537-566
571-605
608-639
675-709
710-743
781-813
815-849
851-884
886-918
921-953
ProfileScan PS51375 PPR 5.426 63-97
98-132
163-197
133-158
198-232
268-298
233-267
324-358
359-393
394-428
464-498
429-463
499-533
534-568
569-603
604-638
639-672
673-707
708-742
778-812
743-777
813-847
848-882
883-917
918-952
965-999
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.4e-07 268-594
no_ID  
HMMPanther PTHR24015 FAMILY 1.1e-216 48-1015
HMMPanther PTHR24015:SF145SUBFAMILY NOT 1.1e-216 48-1015
Seg seg seg NA 8-28
superfamily SSF48452 TPR-like 0.00013 429-556
Wolf-PSORT
Lj4g3v2373740.1	chlo 11, mito 2.5, cyto_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2373740.1