Miyakogusa Predicted Gene

Lj4g3v2367300.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MGR4_SOYBN 969 89.6 94.4 (tr|I1MGR4) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT4G02570.4 859 77.5 89.8 | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738
Medicago Medtr4g119413.1 950 88.5 93.1 | cullin 3B | HC | chr4:49479364-49470936 | 20130731
Soybean Glyma15g16470.1 969 89.6 94.4  
LJGI gnl|LJGI|TC67360 1106 99.0 99.0 homologue to UniRef100_A7NW32 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2367300.2 length: 520 aa.
IPR001373 Cullin, N-terminal
method AccNumber shortName E-value location
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMPfam PF00888 Cullin 6.8e-129 1-424
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 2.5e-31 355-422
423-520
IPR016158 Cullin homology
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMSmart SM00182 Cullin 1.9e-72 197-345
ProfileScan PS50069 CULLIN_2 50.064 166-395
superfamily SSF75632 Cullin 2.7e-91 157-434
IPR016159 Cullin repeat-like-containing domain
superfamily SSF74788 Cullin 3.5e-36 1-165
IPR019559 Cullin protein, neddylation domain
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMPfam PF10557 Cullin_Nedd8 1.1e-26 447-514
HMMSmart SM00884 Cullin 5.4e-33 447-514
no_ID  
Gene3D G3DSA:1.20.1310.10 no description 4e-37 1-39
45-169
170-278
Gene3D G3DSA:4.10.1030.10 no description 2.2e-27 282-354
HMMPanther PTHR11932 CULLIN 0 1-520
HMMPanther PTHR11932:SF21 CULLIN-RELATED 0 1-520
Seg seg seg NA 99-112
superfamily SSF46785 "Winged 8.2e-29 429-520
Wolf-PSORT
Lj4g3v2367300.2	nucl 7.5, cyto_nucl 6.5, cyto 4.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2367300.2