Miyakogusa Predicted Gene

Lj4g3v2365220.3

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SL73_LOTJA 415 98.0 98.0 (tr|I3SL73) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT4G02570.4 174 45.6 69.2 | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738

Medicago Medtr4g119450.1 185 52.1 70.7 | cullin-like protein | LC | chr4:49522675-49520043 | 20130731

Soybean Glyma17g02800.1 180 46.5 68.0

LJGI gnl|LJGI|TC64875 1185 99.7 99.7 weakly similar to UniRef100_Q8LP18 Cluster: Cullin-like protein1; n=1; Pisum sativum|Rep: Cullin-like protein1 - Pisum sativum (Garden pea), partial (17%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2365220.3 length: 202 aa.

IPR001373 Cullin, N-terminal

method AccNumber shortName E-value location

Biological Process GO:0006511 ubiquitin-dependent protein catabolic process

Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex

Molecular Function GO:0031625 ubiquitin protein ligase binding

HMMPfam PF00888 Cullin 8.2e-23 16-189

IPR016159 Cullin repeat-like-containing domain

superfamily SSF74788 Cullin 1.3e-31 12-187

no_ID

Gene3D G3DSA:1.20.1310.10 no description 6.5e-05 12-148
149-188

HMMPanther PTHR11932 CULLIN 2.2e-56 13-188

HMMPanther PTHR11932:SF21 CULLIN-RELATED 2.2e-56 13-188

Wolf-PSORT

Lj4g3v2365220.3 cyto 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2365220.3

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SL73_LOTJA	415	98.0	98.0	(tr\|I3SL73) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT4G02570.4	174	45.6	69.2	\| Symbols: CUL1 \| cullin 1 \| chr4:1129315-1133435 FORWARD LENGTH=738
Medicago	Medtr4g119450.1	185	52.1	70.7	\| cullin-like protein \| LC \| chr4:49522675-49520043 \| 20130731
Soybean	Glyma17g02800.1	180	46.5	68.0
LJGI	gnl\|LJGI\|TC64875	1185	99.7	99.7	weakly similar to UniRef100_Q8LP18 Cluster: Cullin-like protein1; n=1; Pisum sativum\|Rep: Cullin-like protein1 - Pisum sativum (Garden pea), partial (17%)

IPR001373	Cullin, N-terminal
Lj4g3v2365220.3				length: 202 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006511	ubiquitin-dependent protein catabolic process
Cellular Component	GO:0031461	cullin-RING ubiquitin ligase complex
Molecular Function	GO:0031625	ubiquitin protein ligase binding
HMMPfam	PF00888	Cullin	8.2e-23	16-189
IPR016159	Cullin repeat-like-containing domain
superfamily	SSF74788	Cullin	1.3e-31	12-187
no_ID
Gene3D	G3DSA:1.20.1310.10	no description	6.5e-05	12-148 149-188
HMMPanther	PTHR11932	CULLIN	2.2e-56	13-188
HMMPanther	PTHR11932:SF21	CULLIN-RELATED	2.2e-56	13-188