Miyakogusa Predicted Gene

Lj4g3v2352060.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KN08_SOYBN 490 94.4 97.2 (tr|I1KN08) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G49660.1 418 77.4 91.5 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18413690-18415223 FORWARD LENGTH=317

Medicago Medtr4g119620.1 480 91.5 97.2 | transducin/WD40 repeat protein | HC | chr4:49575751-49578750 | 20130731

Soybean Glyma07g37820.1 490 94.4 97.2

LJGI gnl|LJGI|TC75720 1451 99.6 99.6 similar to UniRef100_A9T1H2 Cluster: WD40 repeat protein, COMPASS complex protein; n=1; Physcomitrella patens subsp. patens|Rep: WD40 repeat protein, COMPASS complex protein - Physcomitrella patens subsp. patens, partial (87%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2352060.1 length: 248 aa.

IPR001680 WD40 repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00400 WD40 9.5e-06 4-36
41-78
82-120
133-163
169-208
213-248

HMMSmart SM00320 WD40 1.4 1-36
39-78
81-120
123-163
166-208
211-245

ProfileScan PS50082 WD_REPEATS_2 8.804 4-45
46-87
88-129
131-172
191-217

IPR015943 WD40/YVTN repeat-like-containing domain

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:2.130.10.10 no description 7e-78 4-241

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50294 WD_REPEATS_REGION 60.270 4-248

superfamily SSF50978 WD40 9.5e-72 1-242

IPR019775 WD40 repeat, conserved site

PatternScan PS00678 WD_REPEATS_1 NA 23-37
65-79
107-121
195-209

IPR020472 G-protein beta WD-40 repeat

FPrintScan PR00320 GPROTEINBRPT 2.3e-09 23-37
65-79
107-121

no_ID

HMMPanther PTHR22847 WD40 1.6e-169 1-248

HMMPanther PTHR22847:SF124SUBFAMILY NOT 1.6e-169 1-248

Wolf-PSORT

Lj4g3v2352060.1 cyto 5, extr 5, nucl 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2352060.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KN08_SOYBN	490	94.4	97.2	(tr\|I1KN08) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G49660.1	418	77.4	91.5	\| Symbols: \| Transducin/WD40 repeat-like superfamily protein \| chr3:18413690-18415223 FORWARD LENGTH=317
Medicago	Medtr4g119620.1	480	91.5	97.2	\| transducin/WD40 repeat protein \| HC \| chr4:49575751-49578750 \| 20130731
Soybean	Glyma07g37820.1	490	94.4	97.2
LJGI	gnl\|LJGI\|TC75720	1451	99.6	99.6	similar to UniRef100_A9T1H2 Cluster: WD40 repeat protein, COMPASS complex protein; n=1; Physcomitrella patens subsp. patens\|Rep: WD40 repeat protein, COMPASS complex protein - Physcomitrella patens subsp. patens, partial (87%)

IPR001680	WD40 repeat
Lj4g3v2352060.1				length: 248 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00400	WD40	9.5e-06	4-36 41-78 82-120 133-163 169-208 213-248
HMMSmart	SM00320	WD40	1.4	1-36 39-78 81-120 123-163 166-208 211-245
ProfileScan	PS50082	WD_REPEATS_2	8.804	4-45 46-87 88-129 131-172 191-217
IPR015943	WD40/YVTN repeat-like-containing domain
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:2.130.10.10	no description	7e-78	4-241
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50294	WD_REPEATS_REGION	60.270	4-248
superfamily	SSF50978	WD40	9.5e-72	1-242
IPR019775	WD40 repeat, conserved site
PatternScan	PS00678	WD_REPEATS_1	NA	23-37 65-79 107-121 195-209
IPR020472	G-protein beta WD-40 repeat
FPrintScan	PR00320	GPROTEINBRPT	2.3e-09	23-37 65-79 107-121
no_ID
HMMPanther	PTHR22847	WD40	1.6e-169	1-248
HMMPanther	PTHR22847:SF124SUBFAMILY	NOT	1.6e-169	1-248