Miyakogusa Predicted Gene

Lj4g3v2295880.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL N0DK27_LOTJA 1796 99.5 99.7 (tr|N0DK27) Phytochrome E (Fragment) OS=Lotus japonicus GN=PHYE PE=4 SV=1
TAIR_pep AT4G18130.1 1171 64.9 78.8 | Symbols: PHYE | phytochrome E | chr4:10042312-10045948 REVERSE LENGTH=1112
Medicago Medtr2g049520.1 1359 75.0 84.5 | phytochrome protein | HC | chr2:21814696-21818763 | 20130731
Soybean Glyma09g11600.1 1503 84.9 91.4  
LJGI gnl|LJGI|AU088958 864 98.3 98.3 similar to UniRef100_Q2HRN2 Cluster: Bacteriophytochrome; n=1; Medicago truncatula|Rep: Bacteriophytochrome - Medicago truncatula (Barrel medic), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2295880.1 length: 864 aa.
IPR000014 PAS domain
method AccNumber shortName E-value location
Molecular Function GO:0004871 signal transducer activity    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00091 PAS 0.081 607-674
737-806
HMMTigr TIGR00229 sensory_box: 5.9e-11 612-726
ProfileScan PS50112 PAS 14.707 605-676
738-783
superfamily SSF55785 PYP-like 2.1e-12 611-720
721-857
IPR001294 Phytochrome
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
FPrintScan PR01033 PHYTOCHROME 4.1e-103 135-157
235-254
320-341
420-440
505-524
538-556
608-624
627-642
700-717
720-740
IPR003018 GAF domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF01590 GAF 3.6e-38 224-390
HMMSmart SM00065 Domain 4.5e-22 220-400
IPR013515 Phytochrome, central region
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
Biological Process GO:0018298 protein-chromophore linkage    
HMMPfam PF00360 PHY 6.5e-69 401-578
IPR013654 PAS fold-2
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF08446 PAS_2 5.7e-40 73-187
IPR013767 PAS fold
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00989 PAS 1.4e-21 608-722
738-857
IPR016132 Phytochrome chromophore attachment domain
Biological Process GO:0018298 protein-chromophore linkage    
ProfileScan PS50046 PHYTOCHROME_2 66.110 220-380
no_ID  
Gene3D G3DSA:3.30.450.20 no description 5.9e-08 611-722
723-854
Gene3D G3DSA:3.30.450.40 no description 2.6e-05 226-365
HMMPanther PTHR24423 TWO 9.8e-18 608-857
HMMPanther PTHR24423:SF332SENSOR PROTEIN 9.8e-18 608-857
superfamily SSF55781 GAF 1.3e-09 220-404
Wolf-PSORT
Lj4g3v2295880.1	nucl 5, mito 4, chlo 3, cysk_nucl 3, nucl_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2295880.1