Miyakogusa Predicted Gene

Lj4g3v2289120.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5XQP4_PRUPE 1783 75.6 85.5 (tr|M5XQP4) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000503mg PE=4 SV=1
TAIR_pep AT3G16830.1 1727 73.5 84.5 | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731709-5737531 FORWARD LENGTH=1131
Medicago Medtr4g120900.1 2013 85.6 91.1 | topless-like protein | HC | chr4:49954198-49962193 | 20130731
Soybean Glyma20g38230.1 1684 71.8 82.8  
LJGI gnl|LJGI|TC66714 1963 99.3 99.3 similar to UniRef100_A7PRX2 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2289120.1 length: 1130 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.5e-05 347-376
450-484
490-526
906-943
HMMSmart SM00320 WD40 3.3e+02 337-376
398-437
443-484
486-527
576-616
823-858
861-901
904-943
993-1035
1055-1089
ProfileScan PS50082 WD_REPEATS_2 12.413 450-485
594-625
911-952
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 0.00017 4-36
ProfileScan PS50896 LISH 10.009 4-36
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 1.3e-11 34-92
ProfileScan PS50897 CTLH 12.562 34-92
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.9e-33 321-658
764-1089
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 13.448 343-669
868-952
superfamily SSF50978 WD40 4.8e-37 291-660
816-1105
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 471-485
603-617
no_ID  
HMMPanther PTHR22847 WD40 0 95-1111
HMMPanther PTHR22847:SF106SUBFAMILY NOT 0 95-1111
Seg seg seg NA 230-246
777-785
Wolf-PSORT
Lj4g3v2289120.1	chlo 6, nucl 5, cyto 1, vacu 1, E.R. 1, E.R._vacu 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2289120.1