Miyakogusa Predicted Gene

Lj4g3v2289100.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7L3M1_SOYBN 949 78.7 85.2 (tr|K7L3M1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G11240.1 666 58.8 73.2 | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:3582949-3586782 FORWARD LENGTH=615
Medicago Medtr4g120740.1 894 75.2 83.1 | transducin family protein/WD-40 repeat protein | HC | chr4:49986451-49996350 | 20130731
Soybean Glyma17g03310.1 919 76.6 84.0  
LJGI gnl|LJGI|TC58163 1516 100.0 100.0 similar to UniRef100_A7Q8I3 Cluster: Chromosome chr5 scaffold_64, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_64, whole genome shotgun sequence - Vitis vinifera (Grape), partial (38%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2289100.1 length: 616 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0026 112-142
147-176
187-215
HMMSmart SM00320 WD40 0.0036 4-34
102-142
145-182
185-225
ProfileScan PS50082 WD_REPEATS_2 8.704 13-43
192-234
IPR007148 Small-subunit processome, Utp12
HMMPfam PF04003 Utp12 1.1e-12 479-574
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.2e-34 13-231
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 13.527 110-234
no_ID  
HMMPanther PTHR22847 WD40 1.6e-96 7-276
HMMPanther PTHR22847:SF122SUBFAMILY NOT 1.6e-96 7-276
Seg seg seg NA 402-414
591-615
superfamily SSF101908 Putative 5e-35 13-229
Wolf-PSORT
Lj4g3v2289100.1	chlo 7, nucl 3, cyto 1, mito 1, extr 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2289100.1