Miyakogusa Predicted Gene

Lj4g3v2267660.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5AGZ7_VITVI 192 76.3 86.0 (tr|A5AGZ7) DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_05s0077g01170 PE=3 SV=1
TAIR_pep AT3G16980.1 180 70.2 82.5 | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases M/15 Kd subunit | chr3:5794526-5795699 FORWARD LENGTH=114
Medicago Medtr2g034520.1 187 75.4 82.5 | DNA-directed RNA polymerase subunit | HC | chr2:13190291-13187284 | 20130731
Soybean Glyma09g04220.1 191 77.2 85.1  
LJGI gnl|LJGI|TC71650 135 80.1 80.1 homologue to UniRef100_Q2HU21 Cluster: DNA-directed RNA polymerase, subunit C11/M/9; n=1; Medicago truncatula|Rep: DNA-directed RNA polymerase, subunit C11/M/9 - Medicago truncatula (Barrel medic), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2267660.1 length: 114 aa.
IPR001222 Zinc finger, TFIIS-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01096 TFIIS_C 8.3e-09 75-113
HMMSmart SM00440 C2C2 0.00049 74-114
ProfileScan PS51133 ZF_TFIIS_2 11.614 72-113
IPR001529 DNA-directed RNA polymerase, M/15kDa subunit
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF02150 RNA_POL_M_15KD 2.3e-10 4-36
HMMSmart SM00661 RNA 1.8e-10 5-58
no_ID  
Gene3D G3DSA:2.20.25.10 no description 4.8e-20 1-46
50-114
HMMPanther PTHR11239 DNA-DIRECTED 4.4e-37 1-114
HMMPanther PTHR11239:SF1 DNA-DIRECTED 4.4e-37 1-114
superfamily SSF57783 Zinc 1.8e-13 1-49
50-114
Wolf-PSORT
Lj4g3v2267660.1	nucl 5, chlo 3, nucl_plas 3, cyto 2, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2267660.1