Miyakogusa Predicted Gene

Lj4g3v2267380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KMR2_SOYBN 908 73.4 83.3 (tr|I1KMR2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G17040.1 785 67.9 80.0 | Symbols: HCF107 | high chlorophyll fluorescent 107 | chr3:5809378-5812605 REVERSE LENGTH=652
Medicago Medtr4g122060.1 965 76.9 84.4 | PsbB mRNA maturation factor Mbb1 | HC | chr4:50401178-50394986 | 20130731
Soybean Glyma07g36870.1 908 73.4 83.3  
LJGI gnl|LJGI|FS319097 981 99.4 99.4  
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2267380.1 length: 632 aa.
IPR003107 RNA-processing protein, HAT helix
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006396 RNA processing    
HMMSmart SM00386 HAT 8.4 195-228
230-262
264-296
298-330
332-364
366-398
400-432
434-469
471-503
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 8.4e-11 136-233
234-335
336-436
537-554
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 37.691 147-490
IPR013105 Tetratricopeptide TPR2
HMMPfam PF07719 TPR_2 0.00028 286-316
321-351
422-452
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF13176 TPR_7 0.014 183-207
HMMSmart SM00028 Tetratricopeptide 80 147-180
181-214
216-249
250-283
284-317
318-351
386-419
420-453
457-490
ProfileScan PS50005 TPR 6.136 181-214
216-249
284-317
318-351
386-419
420-453
457-490
no_ID  
HMMPanther PTHR11246 PRE-MRNA 1.6e-226 142-605
HMMPanther PTHR11246:SF10 OS01G0686600 1.6e-226 142-605
Seg seg seg NA 36-43
55-61
superfamily SSF48452 TPR-like 2.6e-10 218-515
141-237
Wolf-PSORT
Lj4g3v2267380.1	chlo 9, nucl 3, nucl_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2267380.1