Miyakogusa Predicted Gene

Lj4g3v2265030.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A1IIA2_LOTJA 2237 98.0 98.0 (tr|A1IIA2) Phytochrome OS=Lotus japonicus GN=phyb PE=2 SV=1
TAIR_pep AT2G18790.1 1777 76.2 86.9 | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172
Medicago Medtr2g034040.1 1997 87.3 93.8 | phytochrome protein B | HC | chr2:12993536-12986584 | 20130731
Soybean Glyma09g03990.1 2046 88.7 94.6  
LJGI gnl|LJGI|TC69456 6564 100.0 100.0 UniRef100_A1IIA2 Cluster: Phytochrome b; n=1; Lotus japonicus|Rep: Phytochrome b - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2265030.1 length: 1143 aa.
IPR000014 PAS domain
method AccNumber shortName E-value location
Molecular Function GO:0004871 signal transducer activity    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00091 PAS 0.0015999997718586555 636-703
767-837
HMMTigr TIGR00229 sensory_box 8.500000000000006E-11 641-756
ProfileScan PS50112 PAS 0.0 634-705
768-820
superfamily SSF55785 SSF55785 1.699999222840494E-11 640-750
751-887
IPR001294 Phytochrome
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
FPrintScan PR01033 PHYTOCHROME 7.800051553995069E-109 154-176
254-273
339-360
449-469
534-553
567-585
637-653
656-671
730-747
750-770
IPR001610 PAC motif
HMMSmart SM00086 PAC 0.12000000217247245 850-892
IPR003018 GAF domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF01590 GAF 4.7000000000000276E-38 242-419
HMMSmart SM00065 GAF 5.899988094056905E-22 239-429
IPR003594 Histidine kinase-like ATPase, ATP-binding domain
Molecular Function GO:0005524 ATP binding    
Gene3D G3DSA:3.30.565.10G3DSA:3.30.565.10 T[975-1137] 1.7000000000850443E-14  
HMMPfam PF02518 HATPase_c 3.2E-11 1021-1123
HMMSmart SM00387 HATPase_c 8.700012612135134E-17 1021-1136
superfamily SSF55874 ATP_bd_ATPase 5.799996538547805E-17 982-1133
IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
Molecular Function GO:0000155 phosphorelay sensor kinase activity    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMPfam PF00512 HisKA 2.4E-10 913-973
HMMSmart SM00388 HisKA 1.0E-14 909-973
IPR005467 Signal transduction histidine kinase, core
ProfileScan PS50109 HIS_KIN 0.0 916-1136
IPR009082 Signal transduction histidine kinase, homodimeric domain
Molecular Function GO:0004871 signal transducer activity    
Biological Process GO:0007165 signal transduction    
superfamily SSF47384 His_kin_homodim 3.6999984480222092E-6 888-975
IPR012129 Phytochrome A/B/C/D/E
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009585 red, far-red light phototransduction    
Molecular Function GO:0009881 photoreceptor activity    
Biological Process GO:0017006 protein-tetrapyrrole linkage    
Molecular Function GO:0042803 protein homodimerization activity    
HMMPIR PIRSF000084 Phytochrome 0.0 21-1143
IPR013515 Phytochrome, central region
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009584 detection of visible light    
Biological Process GO:0018298 protein-chromophore linkage    
HMMPfam PF00360 PHY 1.1000000000000125E-70 431-607
IPR013516 Phytochrome chromophore binding site
Biological Process GO:0018298 protein-chromophore linkage    
PatternScan PS00245 PHYTOCHROME_1 0.0 339-348
IPR013654 PAS fold-2
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF08446 PAS_2 9.40000000000003E-44 87-206
IPR013767 PAS fold
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00989 PAS 9.700000000000003E-22 637-752
768-887
IPR016132 Phytochrome chromophore attachment domain
Biological Process GO:0018298 protein-chromophore linkage    
ProfileScan PS50046 PHYTOCHROME_2 0.0 239-409
no_ID  
Gene3D G3DSA:3.30.450.20G3DSA:3.30.450.20 T[640-753] 1.2000000000065628E-7 783-887
Gene3D G3DSA:3.30.450.40G3DSA:3.30.450.40 T[239-319] 2.4999999999882704E-5  
HMMPanther PTHR24423 PTHR24423 1.1000015067164284E-33 636-1123
superfamily SSF55781 SSF55781 4.799997768362738E-9 239-431
Wolf-PSORT
Lj4g3v2265030.1	chlo 5, nucl 3, chlo_mito 3, plas 2, vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2265030.1