Miyakogusa Predicted Gene

Lj4g3v2249170.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1MRW9_SOYBN 1263 84.2 90.2 (tr|I1MRW9) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT3G53480.1 882 57.7 75.1 | Symbols: PIS1, PDR9, ATPDR9, ABCG37 | pleiotropic drug resistance 9 | chr3:19825366-19831644 FORWARD LENGTH=1450

Medicago Medtr4g123850.1 1229 82.1 89.9 | drug resistance transporter-like ABC domain protein | HC | chr4:51043657-51052469 | 20130731

Soybean Glyma07g36160.1 1087 84.6 90.0

LJGI gnl|LJGI|DC597581 856 99.3 99.3 similar to UniRef100_Q5W274 Cluster: Pleiotropic drug resistance protein 3; n=1; Nicotiana tabacum|Rep: Pleiotropic drug resistance protein 3 - Nicotiana tabacum (Common tobacco), partial (8%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2249170.1 length: 767 aa.

IPR003439 ABC transporter-like

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

HMMPfam PF00005 ABC_tran 1e-05 227-384

ProfileScan PS50893 ABC_TRANSPORTER_2 13.659 188-460

IPR003593 AAA+ ATPase domain

Molecular Function GO:0000166 nucleotide binding

Molecular Function GO:0017111 nucleoside-triphosphatase activity

HMMSmart SM00382 ATPases 4.7e-08 212-437

IPR013525 ABC-2 type transporter

Cellular Component GO:0016020 membrane

HMMPfam PF01061 ABC2_membrane 5.9e-38 539-750

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 5.3e-33 202-464

no_ID

Gene3D G3DSA:3.40.50.300 no description 7.7e-35 319-449

HMMPanther PTHR19241 ATP-BINDING 2.6e-172 413-757

HMMPanther PTHR19241:SF10 ATP-BINDING 2.6e-172 413-757

Seg seg seg NA 225-237
704-720

Wolf-PSORT

Lj4g3v2249170.1 chlo 5, plas 4, nucl 2, golg 2, cysk_plas 2, E.R._plas 2, cyto_plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2249170.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1MRW9_SOYBN	1263	84.2	90.2	(tr\|I1MRW9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT3G53480.1	882	57.7	75.1	\| Symbols: PIS1, PDR9, ATPDR9, ABCG37 \| pleiotropic drug resistance 9 \| chr3:19825366-19831644 FORWARD LENGTH=1450
Medicago	Medtr4g123850.1	1229	82.1	89.9	\| drug resistance transporter-like ABC domain protein \| HC \| chr4:51043657-51052469 \| 20130731
Soybean	Glyma07g36160.1	1087	84.6	90.0
LJGI	gnl\|LJGI\|DC597581	856	99.3	99.3	similar to UniRef100_Q5W274 Cluster: Pleiotropic drug resistance protein 3; n=1; Nicotiana tabacum\|Rep: Pleiotropic drug resistance protein 3 - Nicotiana tabacum (Common tobacco), partial (8%)

IPR003439	ABC transporter-like
Lj4g3v2249170.1				length: 767 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
HMMPfam	PF00005	ABC_tran	1e-05	227-384
ProfileScan	PS50893	ABC_TRANSPORTER_2	13.659	188-460
IPR003593	AAA+ ATPase domain
Molecular Function	GO:0000166	nucleotide binding
Molecular Function	GO:0017111	nucleoside-triphosphatase activity
HMMSmart	SM00382	ATPases	4.7e-08	212-437
IPR013525	ABC-2 type transporter
Cellular Component	GO:0016020	membrane
HMMPfam	PF01061	ABC2_membrane	5.9e-38	539-750
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	5.3e-33	202-464
no_ID
Gene3D	G3DSA:3.40.50.300	no description	7.7e-35	319-449
HMMPanther	PTHR19241	ATP-BINDING	2.6e-172	413-757
HMMPanther	PTHR19241:SF10	ATP-BINDING	2.6e-172	413-757
Seg	seg	seg	NA	225-237 704-720