Miyakogusa Predicted Gene

Lj4g3v2238990.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MJW1_SOYBN 502 87.4 94.4 (tr|K7MJW1) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=1
TAIR_pep AT3G06950.1 401 70.3 81.4 | Symbols: | Pseudouridine synthase family protein | chr3:2192869-2194254 FORWARD LENGTH=323
Medicago Medtr4g123970.1 489 85.4 91.4 | tRNA pseudouridine synthase A | HC | chr4:51119303-51121602 | 20130731
Soybean Glyma13g17960.1 494 87.0 92.9  
LJGI gnl|LJGI|FS351602 597 100.0 100.0 similar to UniRef100_A7NVZ5 Cluster: Pseudouridylate synthase; n=1; Vitis vinifera|Rep: Pseudouridylate synthase - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2238990.1 length: 273 aa.
IPR001406 Pseudouridine synthase I, TruA
method AccNumber shortName E-value location
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HAMAP MF_00171 TruA 27.337 1-243
HMMPIR PIRSF001430 tRNA-pseudouridine 3e-79 4-260
HMMPanther PTHR11142 PSEUDOURIDYLATE 9.3e-82 6-244
HMMTigr TIGR00071 hisT_truA: 1.4e-54 6-228
IPR020094 Pseudouridine synthase I, TruA, N-terminal
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
Gene3D G3DSA:3.30.70.580 no description 2.2e-25 6-99
IPR020095 Pseudouridine synthase I, TruA, C-terminal
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
Gene3D G3DSA:3.30.70.660 no description 4.9e-37 101-245
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HMMPfam PF01416 PseudoU_synth_1 5.5e-18 6-98
137-244
IPR020103 Pseudouridine synthase, catalytic domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
superfamily SSF55120 Pseudouridine 2e-65 6-261
Wolf-PSORT
Lj4g3v2238990.1	cyto 7, chlo 5, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2238990.1