Miyakogusa Predicted Gene
- Lj4g3v2227950.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JR15_MEDTR |
242 |
78.4 |
84.3 |
(tr|G7JR15) ABC transporter B family member OS=Medicago truncatula GN=MTR_4g124040 PE=3 SV=1 |
| TAIR_pep |
AT1G02520.1 |
185 |
69.1 |
82.1 |
| Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278 |
| Medicago |
Medtr4g124040.1 |
242 |
78.4 |
84.3 |
| ABC transporter B family protein | HC | chr4:51195926-51203133 | 20130731 |
| Soybean |
Glyma17g04590.1 |
229 |
89.4 |
95.1 |
|
| LJGI |
gnl|LJGI|DC593645 |
73.8 |
93.9 |
93.9 |
weakly similar to UniRef100_Q9FWX8 Cluster: Multidrug resistance protein 16; n=2; Arabidopsis thaliana|Rep: Multidrug resistance protein 16 - Arabidopsis thaliana (Mouse-ear cress), partial (8%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2227950.1 |
length: 159 aa. |
| IPR001140 |
ABC transporter, transmembrane domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF00664 |
ABC_membrane |
1.4e-11 |
58-158 |
| IPR011527 |
ABC transporter, transmembrane domain, type 1 |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| superfamily |
SSF90123 |
ABC |
7.6e-19 |
22-159 |
| IPR017940 |
ABC transporter, integral membrane type 1 |
| ProfileScan |
PS50929 |
ABC_TM1F |
16.704 |
57-159 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1560.10 |
no description |
7.6e-15 |
43-159 |
| HMMPanther |
PTHR24222 |
FAMILY |
1.3e-73 |
31-159 |
| HMMPanther |
PTHR24222:SF3 |
SUBFAMILY |
1.3e-73 |
31-159 |
| Seg |
seg |
seg |
NA |
18-34 |
- Wolf-PSORT
Lj4g3v2227950.1 cyto 8, chlo 3, nucl 1, plas 1, cysk 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2227950.1 |
|