Miyakogusa Predicted Gene

Lj4g3v2227830.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JR15_MEDTR 836 88.5 93.7 (tr|G7JR15) ABC transporter B family member OS=Medicago truncatula GN=MTR_4g124040 PE=3 SV=1
TAIR_pep AT3G62150.1 710 75.1 85.6 | Symbols: PGP21 | P-glycoprotein 21 | chr3:23008755-23013579 REVERSE LENGTH=1296
Medicago Medtr4g124040.1 836 88.5 93.7 | ABC transporter B family protein | HC | chr4:51195926-51203133 | 20130731
Soybean Glyma13g17930.1 820 87.8 92.2  
LJGI gnl|LJGI|FS361887 200 80.4 80.4 similar to UniRef100_A7Q0Z8 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2227830.1 length: 460 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 1.7e-38 1-171
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1.9e-24 260-385
ProfileScan PS50893 ABC_TRANSPORTER_2 24.390 218-454
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 3.2e-14 245-417
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 7.7e-38 1-375
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 357-371
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 32.894 1-183
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.1e-69 218-440
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 4.7e-32 1-200
Gene3D G3DSA:3.40.50.300 no description 5.4e-85 218-449
HMMPanther PTHR24222 FAMILY 0 1-459
HMMPanther PTHR24222:SF3 SUBFAMILY 0 1-459
Seg seg seg NA 180-189
328-336
Wolf-PSORT
Lj4g3v2227830.1	plas 9.5, E.R._plas 5.5, cyto 2, extr 1, vacu 1, cyto_nucl 1, cyto_pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2227830.1