Miyakogusa Predicted Gene

Lj4g3v2227820.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JR15_MEDTR 868 82.8 88.3 (tr|G7JR15) ABC transporter B family member OS=Medicago truncatula GN=MTR_4g124040 PE=3 SV=1
TAIR_pep AT1G02520.1 741 68.7 81.1 | Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278
Medicago Medtr4g124040.2 868 82.8 88.3 | ABC transporter B family protein | HC | chr4:51196708-51203159 | 20130731
Soybean Glyma13g17920.1 839 79.9 86.7  
LJGI gnl|LJGI|TC65032 884 92.8 92.8 similar to UniRef100_A7NVZ8 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2227820.1 length: 593 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 1.2e-52 14-247
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 5.9e-24 341-467
ProfileScan PS50893 ABC_TRANSPORTER_2 22.336 299-536
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 9.7e-15 326-513
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 2.1e-57 18-284
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 439-453
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 44.609 1-264
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.6e-64 299-522
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 1.7e-51 14-284
Gene3D G3DSA:3.40.50.300 no description 6.8e-81 298-513
HMMPanther PTHR24222 FAMILY 0 1-512
HMMPanther PTHR24222:SF3 SUBFAMILY 0 1-512
Seg seg seg NA 121-134
264-275
402-417
512-531
532-593
Wolf-PSORT
Lj4g3v2227820.1	chlo 5, plas 5, cyto 2, nucl 1, E.R. 1, cyto_pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2227820.1