Miyakogusa Predicted Gene

Lj4g3v2225720.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5HIJ7_9ASTR 99.0 75.4 83.1 (tr|A5HIJ7) DMC1 OS=Hieracium caespitosum GN=DMC1 PE=2 SV=1
TAIR_pep AT3G22880.1 97.8 70.8 84.6 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51) family protein | chr3:8097948-8100740 REVERSE LENGTH=344
Medicago Medtr1g102670.1 99.4 73.8 84.6 | meiotic recombination protein DMC1, putative | HC | chr1:46400379-46403108 | 20130731
Soybean Glyma10g38830.1 99.0 75.4 84.6  
LJGI gnl|LJGI|TC70178 105 95.4 95.4 similar to UniRef100_P37384 Cluster: Meiotic recombination protein DMC1 homolog; n=1; Lilium longiflorum|Rep: Meiotic recombination protein DMC1 homolog - Lilium longiflorum (Trumpet lily), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2225720.1 length: 403 aa.
IPR007199 Replication factor-A protein 1, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMPfam PF04057 Rep-A_N 6e-09 1-44
IPR011600 Peptidase C14, caspase catalytic
Molecular Function GO:0004197 cysteine-type endopeptidase activity    
Biological Process GO:0006508 proteolysis    
HMMPfam PF00656 Peptidase_C14 1.9e-08 198-318
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 2.7e-07 1-38
superfamily SSF50249 Nucleic 5.5e-08 1-51
IPR013632 DNA recombination and repair protein Rad51, C-terminal
HMMPfam PF08423 Rad51 3.5e-21 56-123
IPR020588 DNA recombination/repair protein RecA/RadB, ATP-binding domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006259 DNA metabolic process    
Molecular Function GO:0008094 DNA-dependent ATPase activity    
ProfileScan PS50162 RECA_2 11.047 61-119
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.5e-06 62-122
no_ID  
Gene3D G3DSA:3.40.50.1460 no description 3.6e-05 196-316
Gene3D G3DSA:3.40.50.300 no description 1.8e-13 39-123
HMMPanther PTHR22942 RECA/RAD51/RADA 5.7e-26 55-120
HMMPanther PTHR22942:SF13 MEIOTIC 5.7e-26 55-120
Wolf-PSORT
Lj4g3v2225720.1	cyto 10, mito 2, chlo 1, nucl 1, cyto_mito 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2225720.1