Miyakogusa Predicted Gene

Lj4g3v2214800.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JS69_MEDTR 877 84.5 88.2 (tr|G7JS69) Auxin response factor OS=Medicago truncatula GN=MTR_4g124900 PE=4 SV=1
TAIR_pep AT1G19220.1 764 74.3 82.8 | Symbols: ARF19, IAA22, ARF11 | auxin response factor 19 | chr1:6628395-6632779 REVERSE LENGTH=1086
Medicago Medtr4g124900.1 877 84.5 88.2 | auxin response factor 2 | HC | chr4:51795315-51802487 | 20130731
Soybean Glyma17g05220.1 870 84.3 86.8  
LJGI gnl|LJGI|GO032004 971 99.6 99.6 similar to UniRef100_A7PDS6 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2214800.1 length: 1142 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 5.3e-24 1005-1104
IPR003340 B3 DNA binding domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 1e-20 126-227
HMMSmart SM01019 B3 7.9e-23 126-228
ProfileScan PS50863 B3 12.167 126-228
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 7.8e-35 252-334
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 27.657 1016-1098
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 1.6e-41 118-241
superfamily SSF101936 DNA-binding 4.1e-49 109-256
no_ID  
Coil coil coiled-coil NA 497-554
HMMPanther PTHR31384 FAMILY 3.8e-252 1-1142
Seg seg seg NA 30-43
235-243
250-257
365-377
493-555
560-591
608-617
647-689
701-749
superfamily SSF54277 CAD 1.6e-08 1003-1096
Wolf-PSORT
Lj4g3v2214800.1	nucl 11, cyto 1, vacu 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2214800.1