Miyakogusa Predicted Gene
- Lj4g3v2180380.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T3B9_LOTJA |
452 |
99.5 |
99.5 |
(tr|I3T3B9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G28230.1 |
321 |
67.0 |
85.1 |
| Symbols: | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | chr2:12037855-12039009 REVERSE LENGTH=219 |
| Medicago |
Medtr4g125510.1 |
395 |
86.2 |
92.2 |
| mediator of RNA polymerase II transcription subunit 20b | HC | chr4:52061897-52066670 | 20130731 |
| Soybean |
Glyma17g05810.1 |
372 |
79.8 |
90.4 |
|
| LJGI |
gnl|LJGI|TC60910 |
1302 |
100.0 |
100.0 |
similar to UniRef100_A7PDY8 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (96%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2180380.1 |
length: 218 aa. |
| IPR013921 |
Mediator complex, subunit Med20 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0001104 |
RNA polymerase II transcription cofactor activity |
|
|
| Biological Process |
GO:0006357 |
regulation of transcription from RNA polymerase II promoter |
|
|
| Cellular Component |
GO:0016592 |
mediator complex |
|
|
| HMMPfam |
PF08612 |
Med20 |
2.4e-41 |
1-207 |
| no_ID |
|
| HMMPanther |
PTHR12465 |
UBIQUITIN |
3.5e-50 |
2-216 |
| HMMPanther |
PTHR12465:SF0 |
SUBFAMILY |
3.5e-50 |
2-216 |
- Wolf-PSORT
Lj4g3v2180380.1 mito 6, chlo 2, cyto 2, vacu 2, E.R. 1, pero 1, cyto_nucl 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2180380.1 |
|