Miyakogusa Predicted Gene

Lj4g3v2179300.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q6WG36_PEA 983 76.3 86.3 (tr|Q6WG36) RPA 70kDa subunit OS=Pisum sativum PE=2 SV=1
TAIR_pep AT2G06510.1 895 68.3 81.7 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replication protein A 1A | chr2:2585215-2587601 FORWARD LENGTH=640
Medicago Medtr2g041270.1 997 76.0 87.9 | replication protein A 70 kDa protein | HC | chr2:18105202-18100698 | 20130731
Soybean Glyma15g19090.1 974 75.4 86.1  
LJGI gnl|LJGI|TC57610 345 87.2 87.2 similar to UniRef100_Q6WG36 Cluster: RPA 70kDa subunit; n=1; Pisum sativum|Rep: RPA 70kDa subunit - Pisum sativum (Garden pea), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2179300.1 length: 624 aa.
IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01336 tRNA_anti 5.2e-09 194-267
IPR004591 Replication factor-a protein 1 Rpa1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMTigr TIGR00617 rpa1: 1.1e-184 4-621
IPR007199 Replication factor-A protein 1, N-terminal
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMPfam PF04057 Rep-A_N 1.7e-28 5-100
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 5.4e-48 1-110
181-283
296-426
474-622
superfamily SSF50249 Nucleic 8.7e-29 443-622
1-108
177-294
297-431
IPR013955 Replication factor A, C-terminal
HMMPfam PF08646 Rep_fac-A_C 1.9e-50 465-614
no_ID  
HMMPanther PTHR23273 REPLICATION 3.5e-209 1-622
Seg seg seg NA 151-166
Wolf-PSORT
Lj4g3v2179300.1	extr 9, mito 1.5, mito_plas 1.5, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2179300.1