Miyakogusa Predicted Gene

Lj4g3v2179220.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7LC85_SOYBN 1117 55.1 64.9 (tr|K7LC85) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G20610.1 720 41.7 54.8 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). | chr5:6969184-6972794 FORWARD LENGTH=1164

Medicago Medtr2g040970.3 1122 54.7 65.7 | EEIG1/EHBP1 protein amine-terminal domain protein | HC | chr2:17949516-17954523 | 20130731

Soybean Glyma15g18940.1 968 53.2 62.1

LJGI gnl|LJGI|TC62595 270 81.1 81.1 similar to UniRef100_A7PE22 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2179220.1 length: 1150 aa.

IPR002482 Peptidoglycan-binding Lysin subgroup

method AccNumber shortName E-value location

Biological Process GO:0016998 cell wall macromolecule catabolic process

HMMSmart SM00257 Lysin 1.3e-05 1102-1150

IPR018392 Peptidoglycan-binding lysin domain

Biological Process GO:0016998 cell wall macromolecule catabolic process

HMMPfam PF01476 LysM 3.1e-08 1104-1141

IPR019448 EEIG1/EHBP1 N-terminal domain

HMMPfam PF10358 NT-C2 1.2e-11 75-220

no_ID

Gene3D G3DSA:3.10.350.10 no description 3.1e-05 1104-1149

Seg seg seg NA 30-58
174-189
334-342
529-544
566-572
938-957
1025-1036
1056-1075
1090-1098
1132-1144

superfamily SSF54106 LysM 8.9e-06 1100-1149

Wolf-PSORT

Lj4g3v2179220.1 nucl 10, cyto 2, mito 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2179220.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7LC85_SOYBN	1117	55.1	64.9	(tr\|K7LC85) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G20610.1	720	41.7	54.8	\| Symbols: \| unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). \| chr5:6969184-6972794 FORWARD LENGTH=1164
Medicago	Medtr2g040970.3	1122	54.7	65.7	\| EEIG1/EHBP1 protein amine-terminal domain protein \| HC \| chr2:17949516-17954523 \| 20130731
Soybean	Glyma15g18940.1	968	53.2	62.1
LJGI	gnl\|LJGI\|TC62595	270	81.1	81.1	similar to UniRef100_A7PE22 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)

IPR002482	Peptidoglycan-binding Lysin subgroup
Lj4g3v2179220.1				length: 1150 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0016998	cell wall macromolecule catabolic process
HMMSmart	SM00257	Lysin	1.3e-05	1102-1150
IPR018392	Peptidoglycan-binding lysin domain
Biological Process	GO:0016998	cell wall macromolecule catabolic process
HMMPfam	PF01476	LysM	3.1e-08	1104-1141
IPR019448	EEIG1/EHBP1 N-terminal domain
HMMPfam	PF10358	NT-C2	1.2e-11	75-220
no_ID
Gene3D	G3DSA:3.10.350.10	no description	3.1e-05	1104-1149
Seg	seg	seg	NA	30-58 174-189 334-342 529-544 566-572 938-957 1025-1036 1056-1075 1090-1098 1132-1144
superfamily	SSF54106	LysM	8.9e-06	1100-1149