Miyakogusa Predicted Gene

Lj4g3v2172970.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7MK22_SOYBN 1906 74.5 81.6 (tr|K7MK22) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G19390.1 932 45.0 58.3 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits to 188 proteins in 60 species: Archae - 0; Bacteria - 11; Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | chr2:8390136-8396477 REVERSE LENGTH=1211

Medicago Medtr4g125820.3 1813 71.4 78.8 | plant/F27B13-30 protein | HC | chr4:52238098-52228174 | 20130731

Soybean Glyma13g16630.1 1845 72.6 80.2

LJGI gnl|LJGI|TC80833 2198 99.9 99.9 similar to UniRef100_A7PE35 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2172970.1 length: 1305 aa.

no_ID

method AccNumber shortName E-value location

HMMPanther PTHR31115 FAMILY 0 2-1305

Seg seg seg NA 4-15
276-287
460-472
532-550
593-608
990-1001

Wolf-PSORT

Lj4g3v2172970.1 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2172970.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7MK22_SOYBN	1906	74.5	81.6	(tr\|K7MK22) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G19390.1	932	45.0	58.3	\| Symbols: \| unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits to 188 proteins in 60 species: Archae - 0; Bacteria - 11; Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). \| chr2:8390136-8396477 REVERSE LENGTH=1211
Medicago	Medtr4g125820.3	1813	71.4	78.8	\| plant/F27B13-30 protein \| HC \| chr4:52238098-52228174 \| 20130731
Soybean	Glyma13g16630.1	1845	72.6	80.2
LJGI	gnl\|LJGI\|TC80833	2198	99.9	99.9	similar to UniRef100_A7PE35 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

no_ID
Lj4g3v2172970.1				length: 1305 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR31115	FAMILY	0	2-1305
Seg	seg	seg	NA	4-15 276-287 460-472 532-550 593-608 990-1001