Miyakogusa Predicted Gene
- Lj4g3v2121810.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JQD4_SOYBN |
103 |
96.1 |
100.0 |
(tr|I1JQD4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G03850.1 |
86.7 |
82.4 |
94.1 |
| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr5:1028542-1028736 REVERSE LENGTH=64 |
| Medicago |
Medtr6g013210.1 |
102 |
94.1 |
100.0 |
| 40S ribosomal protein S28-1 | HC | chr6:4153412-4155190 | 20130731 |
| Soybean |
Glyma13g37600.1 |
103 |
96.1 |
100.0 |
|
| LJGI |
gnl|LJGI|TC69579 |
392 |
100.0 |
100.0 |
homologue to UniRef100_Q2HWC2 Cluster: Ribosomal protein S28e; n=1; Medicago truncatula|Rep: Ribosomal protein S28e - Medicago truncatula (Barrel medic), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2121810.1 |
length: 65 aa. |
| IPR000289 |
Ribosomal protein S28e |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003735 |
structural constituent of ribosome |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Cellular Component |
GO:0005840 |
ribosome |
|
|
| Biological Process |
GO:0006412 |
translation |
|
|
| BlastProDom |
PD005541 |
Q8LK53_HELAN_Q8LK53; |
7e-18 |
1-46 |
| HMMPanther |
PTHR10769 |
40S |
1.2e-45 |
1-65 |
| HMMPfam |
PF01200 |
Ribosomal_S28e |
2.4e-33 |
3-65 |
| PatternScan |
PS00961 |
RIBOSOMAL_S28E |
NA |
56-64 |
| IPR012340 |
Nucleic acid-binding, OB-fold |
| Gene3D |
G3DSA:2.40.50.140 |
no description |
1.6e-35 |
1-65 |
| superfamily |
SSF50249 |
Nucleic |
6.7e-26 |
2-65 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
52-65 |
- Wolf-PSORT
Lj4g3v2121810.1 chlo 3, nucl 3, cyto 3, mito 3, cyto_nucl 3, chlo_mito 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2121810.1 |
|