Miyakogusa Predicted Gene

Lj4g3v2120410.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JUE1_MEDTR 1148 70.4 79.4 (tr|G7JUE1) WD repeat-containing protein OS=Medicago truncatula GN=MTR_4g127820 PE=4 SV=1
TAIR_pep AT2G18900.1 896 55.1 69.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:8188491-8192409 REVERSE LENGTH=804
Medicago Medtr4g127820.1 1155 70.5 79.7 | transducin/WD-like repeat-protein | HC | chr4:53157953-53165754 | 20130731
Soybean Glyma13g00880.1 1114 69.4 79.3  
LJGI gnl|LJGI|FS334902 1550 99.5 99.5 similar to UniRef100_A7Q8C3 Cluster: Chromosome chr14 scaffold_63, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_63, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2120410.1 length: 801 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.096 40-79
197-232
271-304
482-506
HMMSmart SM00320 WD40 3.7e+02 36-79
193-233
266-305
467-507
523-561
564-605
ProfileScan PS50082 WD_REPEATS_2 11.645 43-88
201-232
273-314
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.5e-14 13-100
262-493
494-773
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.049 43-88
273-314
superfamily SSF50978 WD40 8.6e-30 13-409
no_ID  
HMMPanther PTHR22847 WD40 1.4e-288 1-770
HMMPanther PTHR22847:SF207TRANSDUCIN FAMILY 1.4e-288 1-770
Seg seg seg NA 361-374
417-435
601-617
superfamily SSF82171 DPP6 1.7e-19 275-675
Wolf-PSORT
Lj4g3v2120410.1	plas 10.5, golg_plas 6.5, golg 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2120410.1