Miyakogusa Predicted Gene

Lj4g3v1987840.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JFK8_MEDTR 490 86.6 93.3 (tr|G7JFK8) F-box protein SKIP1 OS=Medicago truncatula GN=MTR_4g130620 PE=4 SV=1
TAIR_pep AT5G57900.1 333 59.3 76.3 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5:23449916-23450915 REVERSE LENGTH=300
Medicago Medtr4g130620.1 490 86.6 93.3 | F-box SKIP1-like protein | HC | chr4:54425231-54427158 | 20130731
Soybean Glyma02g36660.1 480 85.8 91.0  
LJGI gnl|LJGI|TC57273 1600 100.0 100.0 similar to UniRef100_A7PFP9 Cluster: Chromosome chr11 scaffold_14, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_14, whole genome shotgun sequence - Vitis vinifera (Grape), partial (93%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1987840.1 length: 268 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.027 204-224
IPR006553 Leucine-rich repeat, cysteine-containing subtype
HMMSmart SM00367 Leucine-rich 0.23 79-104
105-130
202-227
no_ID  
Gene3D G3DSA:3.80.10.10 no description 5.7e-33 2-233
HMMPanther PTHR23125 F-BOX/LEUCINE 2.9e-88 1-235
HMMPanther PTHR23125:SF200PUTATIVE UNCHARACTERIZED 2.9e-88 1-235
HMMPfam PF13516 LRR_6 1.1 79-101
105-117
superfamily SSF52047 RNI-like 1.4e-22 33-217
Wolf-PSORT
Lj4g3v1987840.1	cyto 9, nucl 2, mito 1, extr 1, cysk 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1987840.1