Miyakogusa Predicted Gene

Lj4g3v1986770.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JFK8_MEDTR 536 84.4 92.4 (tr|G7JFK8) F-box protein SKIP1 OS=Medicago truncatula GN=MTR_4g130620 PE=4 SV=1
TAIR_pep AT5G57900.1 365 58.9 75.5 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5:23449916-23450915 REVERSE LENGTH=300
Medicago Medtr4g130620.1 536 84.4 92.4 | F-box SKIP1-like protein | HC | chr4:54425231-54427158 | 20130731
Soybean Glyma02g36660.1 529 83.7 90.2  
LJGI gnl|LJGI|TC57273 1826 100.0 100.0 similar to UniRef100_A7PFP9 Cluster: Chromosome chr11 scaffold_14, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_14, whole genome shotgun sequence - Vitis vinifera (Grape), partial (93%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1986770.1 length: 305 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.033 241-261
IPR001810 F-box domain, cyclin-like
Molecular Function GO:0005515 protein binding    
superfamily SSF81383 F-box 9.2e-08 13-53
IPR006553 Leucine-rich repeat, cysteine-containing subtype
HMMSmart SM00367 Leucine-rich 0.23 116-141
142-167
239-264
no_ID  
Gene3D G3DSA:3.80.10.10 no description 2e-38 10-270
HMMPanther PTHR23125 F-BOX/LEUCINE 6.3e-100 1-272
HMMPanther PTHR23125:SF200PUTATIVE UNCHARACTERIZED 6.3e-100 1-272
HMMPfam PF13516 LRR_6 1.3 116-138
142-154
superfamily SSF52047 RNI-like 1.4e-22 70-254
Wolf-PSORT
Lj4g3v1986770.1	cyto 7, nucl 4, chlo 1, extr 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1986770.1