Miyakogusa Predicted Gene

Lj4g3v1983620.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JGN9_MEDTR 875 73.5 77.7 (tr|G7JGN9) Signal recognition particle receptor subunit alpha OS=Medicago truncatula GN=MTR_4g130770 PE=4 SV=1
TAIR_pep AT4G30600.1 793 66.5 73.1 | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14938142-14940600 REVERSE LENGTH=634
Medicago Medtr4g130770.1 875 73.5 77.7 | signal recognition particle receptor protein, putative | HC | chr4:54489810-54494349 | 20130731
Soybean Glyma06g28570.1 854 71.9 76.6  
LJGI gnl|LJGI|TC71730 1667 99.2 99.2 homologue to UniRef100_A7PFQ9 Cluster: Chromosome chr11 scaffold_14, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr11 scaffold_14, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1983620.1 length: 615 aa.
IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF00448 SRP54 7.2e-56 410-614
HMMSmart SM00962 SRP54-type 3.8e-85 409-615
PatternScan PS00300 SRP54 NA 588-601
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.5e-09 408-548
IPR007222 Signal recognition particle receptor, alpha subunit, N-terminal
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005047 signal recognition particle binding    
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005785 signal recognition particle receptor complex    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
HMMPfam PF04086 SRP-alpha_N 4.5e-57 25-291
IPR011012 Longin-like domain
Biological Process GO:0006810 transport    
superfamily SSF64356 SNARE-like 2.6e-39 1-119
IPR013822 Signal recognition particle, SRP54 subunit, helical bundle
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF02881 SRP54_N 8.6e-07 309-378
HMMSmart SM00963 SRP54-type 0.0025 306-388
superfamily SSF47364 Domain 9.4e-13 303-390
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.3e-43 401-615
no_ID  
Gene3D G3DSA:1.20.120.140 no description 1.9e-11 310-390
Gene3D G3DSA:3.40.50.300 no description 7.7e-72 405-614
HMMPanther PTHR11564 GTPASE 8.1e-257 2-615
HMMPanther PTHR11564:SF8 SIGNAL 8.1e-257 2-615
Seg seg seg NA 140-164
223-235
255-262
278-308
411-421
Wolf-PSORT
Lj4g3v1983620.1	chlo 7, nucl 3, cyto 2, extr 1, pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1983620.1