Miyakogusa Predicted Gene
- Lj4g3v1983380.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JGN9_SOYBN |
776 |
83.4 |
89.3 |
(tr|I1JGN9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G30950.1 |
671 |
71.4 |
82.6 |
| Symbols: FAD6, FADC, SFD4 | fatty acid desaturase 6 | chr4:15057278-15059673 REVERSE LENGTH=448 |
| Medicago |
Medtr4g130980.1 |
768 |
82.7 |
88.6 |
| fatty-acid desaturase | HC | chr4:54622427-54616212 | 20130731 |
| Soybean |
Glyma02g36460.1 |
776 |
83.4 |
89.3 |
|
| LJGI |
gnl|LJGI|BP042120 |
202 |
100.0 |
100.0 |
homologue to UniRef100_Q0J5E5 Cluster: Os08g0440900 protein; n=2; Oryza sativa Japonica Group|Rep: Os08g0440900 protein - Oryza sativa subsp. japonica (Rice), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1983380.1 |
length: 441 aa. |
| IPR005804 |
Fatty acid desaturase, type 1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006629 |
lipid metabolic process |
|
|
| HMMPfam |
PF00487 |
FA_desaturase |
4.4e-29 |
143-389 |
| no_ID |
|
| HMMPanther |
PTHR19353 |
FATTY |
1.1e-57 |
124-440 |
| Seg |
seg |
seg |
NA |
58-77 |
- Wolf-PSORT
Lj4g3v1983380.1 chlo 5, mito 3, E.R. 2, mito_plas 2, cyto 1.5, cyto_nucl 1.5, cyto_mito 1.5, E.R._vacu 1.5, E.R._plas 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1983380.1 |
|