Miyakogusa Predicted Gene

Lj4g3v1971930.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JHS5_MEDTR 1811 91.2 95.1 (tr|G7JHS5) 116 kDa U5 small nuclear ribonucleoprotein component OS=Medicago truncatula GN=MTR_4g116430 PE=4 SV=1
TAIR_pep AT1G06220.1 1691 84.1 91.8 | Symbols: MEE5, CLO, GFA1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:1900524-1904583 FORWARD LENGTH=987
Medicago Medtr4g116430.1 1826 91.7 95.6 | elongation factor EF-Tu-like protein | HC | chr4:48238045-48231702 | 20130731
Soybean Glyma17g11410.1 1796 90.6 93.9  
LJGI gnl|LJGI|DC600076 1108 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1971930.1 length: 962 aa.
IPR000640 Translation elongation factor EFG, V domain
method AccNumber shortName E-value location
Gene3D G3DSA:3.30.70.240 no description 1.7e-36 845-958
HMMPfam PF00679 EFG_C 2.8e-21 842-930
HMMSmart SM00838 Elongation 1.4e-19 842-931
IPR000795 Elongation factor, GTP-binding domain
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
FPrintScan PR00315 ELONGATNFCT 7e-10 142-155
214-224
230-241
266-275
HMMPfam PF00009 GTP_EFTU 8.4e-46 140-334
IPR004161 Translation elongation factor EFTu/EF1A, domain 2
Molecular Function GO:0005525 GTP binding    
HMMPfam PF03144 GTP_EFTU_D2 1e-11 508-582
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 1.2e-15 141-281
IPR005517 Translation elongation factor EFG/EF2, domain IV
Molecular Function GO:0005525 GTP binding    
HMMPfam PF03764 EFG_IV 2.4e-25 725-839
HMMSmart SM00889 Elongation 8.7e-19 719-840
IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel
superfamily SSF50447 Translation 6.4e-37 456-593
IPR009022 Elongation factor G, III-V domain
superfamily SSF54980 EF-G 2.9e-17 845-932
597-675
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Gene3D G3DSA:3.30.230.10 no description 4.4e-71 686-844
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 1.7e-65 676-844
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.7e-85 124-455
no_ID  
Gene3D G3DSA:2.40.30.10 no description 9.5e-45 451-598
Gene3D G3DSA:3.30.70.870 no description 3.2e-15 602-675
Gene3D G3DSA:3.40.50.300 no description 2.6e-55 133-333
Gene3D G3DSA:3.90.1430.10 no description 1.3e-27 335-439
HMMPanther PTHR23115 TRANSLATION 0 4-962
HMMPanther PTHR23115:SF5 116 0 4-962
Seg seg seg NA 230-245
Wolf-PSORT
Lj4g3v1971930.1	nucl 7, chlo 3, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1971930.1