Miyakogusa Predicted Gene

Lj4g3v1947730.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JGL8_MEDTR 984 85.5 90.8 (tr|G7JGL8) F-box/LRR-repeat protein OS=Medicago truncatula GN=MTR_4g116170 PE=4 SV=1
TAIR_pep AT1G15740.1 665 64.4 79.3 | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585
Medicago Medtr4g116170.1 984 85.5 90.8 | F-box/LRR-like protein | HC | chr4:48044473-48055979 | 20130731
Soybean Glyma13g23240.1 966 83.7 90.1  
LJGI gnl|LJGI|TC70074 1459 100.0 100.0 similar to UniRef100_A7QQ79 Cluster: Chromosome undetermined scaffold_141, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_141, whole genome shotgun sequence - Vitis vinifera (Grape), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1947730.2 length: 578 aa.
IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype
method AccNumber shortName E-value location
HMMSmart SM00368 Leucine 2.2 254-280
350-383
519-548
IPR006553 Leucine-rich repeat, cysteine-containing subtype
HMMSmart SM00367 Leucine-rich 0.38 155-180
181-205
229-254
256-278
350-374
398-422
423-446
494-518
519-543
IPR025875 Leucine rich repeat 4
HMMPfam PF12799 LRR_4 1.6e-08 327-365
no_ID  
Gene3D G3DSA:3.80.10.10 no description 6.1e-43 73-334
335-572
HMMPanther PTHR23125 F-BOX/LEUCINE 2.1e-198 51-535
HMMPanther PTHR23125:SF154SUBFAMILY NOT 2.1e-198 51-535
HMMPfam PF13516 LRR_6 0.0076 398-420
422-443
520-540
HMMPfam PF13855 LRR_8 8.6e-08 256-313
Seg seg seg NA 293-311
superfamily SSF52047 RNI-like 2.3e-32 110-361
362-575
Wolf-PSORT
Lj4g3v1947730.2	nucl 9, plas 1.5, golg_plas 1.5, chlo 1, cyto 1, mito 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1947730.2 Not targeted -55.533 -0.844 -2.655 83.28% -52.034