Miyakogusa Predicted Gene

Lj4g3v1909910.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LNN5_SOYBN 491 65.1 73.0 (tr|I1LNN5) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G57820.1 426 56.8 67.2 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RING finger) family protein | chr1:21414342-21417902 REVERSE LENGTH=645
Medicago Medtr8g102580.1 429 55.9 66.6 | E3 ubiquitin-protein ligase orthrus-like protein | HC | chr8:43193189-43197470 | 20130731
Soybean Glyma12g00330.1 491 65.4 73.4  
LJGI gnl|LJGI|TC59353 652 99.7 99.7 similar to UniRef100_A7QT83 Cluster: Chromosome chr1 scaffold_166, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_166, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1909910.1 length: 405 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 1e-06 13-59
152-190
ProfileScan PS50089 ZF_RING_2 12.194 152-191
IPR001965 Zinc finger, PHD-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 6e-06 12-60
IPR003105 SRA-YDG
Molecular Function GO:0042393 histone binding    
Gene3D G3DSA:2.30.280.10 no description 6.3e-34 281-379
HMMPfam PF02182 YDG_SRA 3.2e-32 271-378
HMMSmart SM00466 SET 8e-28 265-387
ProfileScan PS51015 YDG 30.532 270-405
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 5e-09 5-68
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.4e-21 12-60
136-213
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 13-59
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
HMMPfam PF00628 PHD 2.5e-07 12-61
ProfileScan PS50016 ZF_PHD_2 9.072 10-62
no_ID  
HMMPanther PTHR14140 E3 3e-142 1-374
HMMPanther PTHR14140:SF1 RING 3e-142 1-374
HMMPfam PF13923 zf-C3HC4_2 5e-11 150-192
Seg seg seg NA 112-139
superfamily SSF57850 RING/U-box 3.5e-16 110-217
Wolf-PSORT
Lj4g3v1909910.1	chlo 6, cyto 3, nucl 2, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1909910.1