Miyakogusa Predicted Gene

Lj4g3v1881890.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M042_SOYBN 1195 84.7 89.6 (tr|K7M042) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G35430.1 620 49.1 65.6 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:13662077-13665735 FORWARD LENGTH=786
Medicago Medtr4g115350.2 1145 80.0 86.8 | CCR4-NOT transcription complex subunit-like protein | HC | chr4:47634221-47641746 | 20130731
Soybean Glyma17g11950.1 1190 84.0 89.2  
LJGI gnl|LJGI|TC70202 1176 100.0 100.0 similar to UniRef100_A4Q7K5 Cluster: Immunoglobulin/major histocompatibility complex; Tetratricopeptide- like helical; n=1; Medicago truncatula|Rep: Immunoglobulin/major histocompatibility complex; Tetratricopeptide- like helical - Medicago truncatula (Barrel medic), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1881890.2 length: 705 aa.
IPR001440 Tetratricopeptide TPR-1
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00515 TPR_1 0.0024 245-269
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.7e-18 622-691
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 9.058 629-662
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMSmart SM00028 Tetratricopeptide 24 241-274
291-324
629-662
ProfileScan PS50005 TPR 8.113 241-274
629-662
no_ID  
HMMPanther PTHR12979 FAMILY 1.3e-214 2-696
HMMPanther PTHR12979:SF4 SUBFAMILY 1.3e-214 2-696
Seg seg seg NA 96-113
442-452
superfamily SSF48452 TPR-like 3e-08 203-340
511-687
Wolf-PSORT
Lj4g3v1881890.2	chlo 6, extr 4, cyto 2, nucl 1, pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1881890.2