Miyakogusa Predicted Gene
- Lj4g3v1881820.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7ML30_SOYBN |
1512 |
75.0 |
83.9 |
(tr|K7ML30) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
--No_Hits--
|
|
|
|
|
| Medicago |
Medtr4g115340.1 |
1509 |
73.9 |
83.7 |
| Rap1-interacting factor 1 amine-terminal protein | HC | chr4:47626813-47620944 | 20130731 |
| Soybean |
Glyma17g11960.1 |
183 |
84.6 |
91.3 |
|
| LJGI |
gnl|LJGI|TC73508 |
337 |
100.0 |
100.0 |
similar to UniRef100_A7PF92 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1881820.1 |
length: 1025 aa. |
| IPR011989 |
Armadillo-like helical |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.25.10.10 |
no description |
6.8e-05 |
533-561 |
| IPR016024 |
Armadillo-type fold |
| Molecular Function |
GO:0005488 |
binding |
|
|
| superfamily |
SSF48371 |
ARM |
2.1e-08 |
4-412 |
| IPR022031 |
Rap1-interacting factor 1 N-terminal |
| HMMPfam |
PF12231 |
Rif1_N |
2.4e-18 |
165-297 |
| no_ID |
|
| HMMPanther |
PTHR22928 |
TELOMERE-ASSOCIATED |
1.1e-12 |
56-298 |
| Seg |
seg |
seg |
NA |
40-51 |
- Wolf-PSORT
Lj4g3v1881820.1 nucl 8, chlo 1, cyto 1, plas 1, vacu 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1881820.1 |
|