Miyakogusa Predicted Gene
- Lj4g3v1880850.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6SYG8_SOYBN |
361 |
92.6 |
95.8 |
(tr|C6SYG8) Uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT2G26580.2 |
262 |
78.4 |
87.0 |
| Symbols: YAB5 | plant-specific transcription factor YABBY family protein | chr2:11303923-11306739 REVERSE LENGTH=164 |
| Medicago |
Medtr4g114730.1 |
343 |
86.5 |
93.8 |
| plant-specific transcription factor YABBY family protein | HC | chr4:47236664-47232867 | 20130731 |
| Soybean |
Glyma17g12200.1 |
361 |
92.6 |
95.8 |
|
| LJGI |
gnl|LJGI|TC62821 |
91.7 |
82.3 |
82.3 |
similar to UniRef100_A7PGA9 Cluster: Chromosome chr6 scaffold_15, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_15, whole genome shotgun sequence - Vitis vinifera (Grape), partial (68%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v1880850.1 |
length: 190 aa. |
| IPR006780 |
YABBY protein |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF04690 |
YABBY |
1.8e-60 |
8-163 |
| IPR009071 |
High mobility group (HMG) box domain |
| superfamily |
SSF47095 |
HMG-box |
8.5e-07 |
95-157 |
| no_ID |
|
| HMMPanther |
PTHR31675 |
FAMILY |
1.2e-85 |
6-178 |
| HMMPanther |
PTHR31675:SF0 |
SUBFAMILY |
1.2e-85 |
6-178 |
- Wolf-PSORT
Lj4g3v1880850.1 extr 4, chlo 2, nucl 2, cyto 2, plas 2, cyto_nucl 2, nucl_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v1880850.1 |
|